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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 08:17:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

AF123245 Gossypium hirsutum 24 days postanthesis secondary-stage fibers Gossypium hirsutum cDNA clone CF16S, mRNA sequence.
AF123245.1:290-309
CCTTCAGCCAAGGGATTGGCATTACCGCGC290CCAAGGCAAGAAAACGAGACAAAACTATGAGTCTCGGTCTCTAAATTTAG
GA__Ed0070H07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0070H07f, mRNA sequence.
BQ404454.1:275-294
CCTTCAGCCAAGGGATTGGCATTACCGCGC275CCAAGGCAAGAAAACGAGACAAAACTATGAGTCTCGGTCTCTAAATTTAG
GR__Eb10H09.f GR__Eb Gossypium raimondii cDNA clone GR__Eb10H09 5', mRNA sequence.
CO126433.1:183-202
CCTTCAGCCAAGGGATTGGCATTACCGCGC183CCAAGGCAAGAAAACGAGACAAAACTATGAGTCTCGGTCTCTAAATTTAG
GH_CHX14J11.r GH_CHX Gossypium hirsutum cDNA clone GH_CHX14J11 3', mRNA sequence.
DT463940.1:368-387
CCTTCAGCCAAGGGATTGGCATTACCGCGC368CCAAGGCAAGAAAACGAGACAAAACTATGAGTCTCGGTCTCTAAATTTAG
UFL_492_75 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES791291.1:337-356
CCTTCAGCCAAGGGATTGGCATTACCGCGC337CCAAGGCAAGAAAACGAGACAAAACTATGAGTCTCGGTCTCTAAATTTAG
EST000724 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 03-L08 5', mRNA sequence.
GR707524.1:394-413
CCTTCAGCCAAGGGATTGGCATTACCGCGC394CCAAGGCAAGAAAACGAGACAAAACTATGAGTCTCGGTCTCTAAATTTAG
mhczaa0_011347.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_011347.z1, mRNA sequence.
JG838322.1:542-561
CCTTCAGCCAAGGGATTGACATTACCGCGC542CCAAGGCAAGAAAACGAGACAAAACTATGAGTCTCGGTCTCTAAATTTAG
mhczaa0_024204.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_024204.z1, mRNA sequence.
JG848569.1:447-466
CCTTCAGCCAAGGGATTGGCATTACCGCGC447CCAAGGCAAGAAAACGAGACAAAACTATGAGTCTCGGTCTCTAAATTTAG
Gossypium raimondii isolate D5-4 chromosome D5_09.
CP032561.1:28740722-28740741
CCTTCAGCCAAGGGATTGGCATTACCGCGC28740722CCAAGGCAAGAAAACGAGACAAAACTATGAGTCTCGGTCTCTAAATTTAG
Gossypium herbaceum isolate GPA1alz chromosome 9.
CP106708.1:65907166-65907185
CCTTCAGCCAAGGGATTGGCATTACCGCGC65907166CCAAGGCAAGAAAACGAGACAAAACTATGAGTCTCGGTCTCTAAATTTAG
Gossypium rotundifolium isolate GPK201 chromosome 9.
CP106730.1:106851402-106851421
CCTTCAGCCAAGGGATTGGCATTACCGCGC106851402CCAAGGCAAGAAAACGAGACAAAACTATGAGTCTCGGTCTCTAAATTTAG
Streptomyces rectiverticillatus strain B15-08 chromosome, complete genome.
CP040752.1:3312172-3312191
GGAGCAGAAGAAGGGCTTTGGTGTGGCCGC3312172CCAAGGCAAGAAAACGAGACGGCACATCGGCCGCAAGAGGTGGAACCACG
Gossypium turneri isolate D10-2 chromosome D10_09.
CP032579.1:14655599-14655618
CTAAATTTAGAGACCGAGACTCATAGTTTT14655599GTCTCGTTTTCTTGCCTTGGGCGCGGTAATGCCAATCCCTTGGCTGAAGG
Gossypium herbaceum isolate Zhongcao1 chromosome 9.
CP106695.1:7206211-7206230
CTAAATTTAGAGACCGAGACTCATAGTTTT7206211GTCTCGTTTTCTTGCCTTGGGCGCGGTAATGCCAATCCCTTGGCTGAAGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAAGGCAAGAAAACGAGAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAAGGCAAGAAAACGAGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.474 | 0.466 | search_plus_done; http://172.18.8.135:50400/match?q=CCAAGGCAAGAAAACGAGAC&k=0&no_gap=0&offset=0&limit=50
0.513 | 0.038 | search_minus_done; http://172.18.8.135:50400/match?q=GTCTCGTTTTCTTGCCTTGG&k=0&no_gap=0&offset=0&limit=38
0.514 | 0.001 | cgi_end;

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