GGGenome | Results

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2025-04-06 07:59:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

PP_LBa0043-J14.R PP_LBa Prunus persica genomic 3', genomic survey sequence.
FI961755.1:256-275

CATTTGCTTTCAATATAAAATCCCACAAAA256CCAAGGTGCCAAGTCAATGTATAGTACTGCTAACATATTGCAAAATATGC

Prunus dulcis DNA, pseudomolecule Pd04.
AP019300.1:8882602-8882621

GCATATTTTGCAATATGTTAGCAGTACTAT8882602ACATTGACTTGGCACCTTGGTTTTGTGGGATTTTATATTGAAAGCAAATG

Yponomeuta malinellus genome assembly, chromosome: 16.
OX371010.1:2076677-2076696

ATAAGACAGATTTCCAATCTTTTACGCCTA2076677ACATTGACTTGGCACCTTGGGCTTCGGATCTTTTCGAGTTTGAAAGGTAC

Yponomeuta cagnagella genome assembly, chromosome: 16.
OX371244.1:2088023-2088042

ATAAGACAGATTTCCAATCTTTTACGCCTA2088023ACATTGACTTGGCACCTTGGGCTTCGGATCTTTTCGAGTTTGAAAGGTAC

Yponomeuta cagnagella genome assembly, chromosome: 16.
OX371283.1:2112947-2112966

ATAAGACAGATTTCCAATCTTTTACGCCTA2112947ACATTGACTTGGCACCTTGGGCTTCGGATCTTTTCGAGTTTGAAAGGTAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.158 | 0.150 | search_plus_done; http://172.18.8.135:50400/match?q=CCAAGGTGCCAAGTCAATGT&k=0&no_gap=0&offset=0&limit=50
0.185 | 0.026 | search_minus_done; http://172.18.8.135:50400/match?q=ACATTGACTTGGCACCTTGG&k=0&no_gap=0&offset=0&limit=49
0.187 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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