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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 09:06:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mdfb8004G04.g1 Apple_EST_Mdfb Malus domestica cDNA similar to sp|P55748|CP22_HORVU Serine carboxypeptidase II-2 precursor (CP-MII.2) gb|AAB31590.1| CP-MII.2=serine carboxypeptidase [Hordeum vulgare=ba
DT001523.1:512-532
TCCAACCTGCCCATCATCGTACCATGCACG512CCAAGGTTTGACAGTTGGAAGCTTAAGAGCATCTATACTGTATCGGGTAGA
Mdlr7001I08.g1 Apple_EST_Mdlr Malus domestica cDNA similar to sp|P55748|CP22_HORVU Serine carboxypeptidase II-2 precursor (CP-MII.2) gb|AAB31590.1| CP-MII.2=serine carboxypeptidase [Hordeum vulgare=ba
DT001694.1:519-539
TCCAACCTGCCCATCATCGTACCATGCACG519CCAAGGTTTGACAGTTGGAAGCTTAAGAGCATCTATACTGTATCGGGTAGA
TSA: Pyrus x bretschneideri Unigene80831_XinShao mRNA sequence.
JR665355.1:192-212
TCCAACCTGCCCATCATCGTACCATGCACG192CCAAGGTTTGACAGTTGGAAGCTTAAGAGCATCTATACTGTATCGGGTAGA
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:41758909-41758929
GTTTACCTGCCCATCATCGTACCATGCACG41758909CCAAGGTTTGACAGTTGGAAGCTTAAGAGCATCTATACTGTATCGGGTAGA
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:45354318-45354338
GTTTACCTGCCCATCATCGTACCATGCACG45354318CCAAGGTTTGACAGTTGGAAGCTTAAGAGCATCTATACTGTATCGGGTAGA
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:41383314-41383334
GTTTACCTGCCCATCATCGTACCATGCACG41383314CCAAGGTTTGACAGTTGGAAGCTTAAGAGCATCTATACTGTATCGGGTAGA
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:42375498-42375518
GTTTACCTGCCCATCATCGTACCATGCACG42375498CCAAGGTTTGACAGTTGGAAGCTTAAGAGCATCTATACTGTATCGGGTAGA
Malus x robusta genome assembly, chromosome: 1.
OY720325.1:41378414-41378434
GTTTACCTGCCCATCATCGTACCATGCACG41378414CCAAGGTTTGACAGTTGGAAGCTTAAGAGCATCTATACTGTATCGGGTAGA
Crataegus laevigata genome assembly, chromosome: 5.
OY756942.1:40688945-40688965
TCCTGCTCATCTTCGTACCAGGCAGGCACG40688945CCAAGGTTTGACAGTTGGAAGCTTAAGAGCATCAATATACTGTACTTTATC
Crataegus laevigata genome assembly, chromosome: 7.
OY756944.1:28734355-28734375
GTTTACCTGCCCATCATCGTACCATGCACG28734355CCAAGGTTTGACAGTTGGAAGCTTAAGAGCATCTATACTGTATCGGGTAGA
Mdfw2054f18.y1 Mdfw Malus domestica cDNA clone Mdfw2054f18 5' similar to SW:CP22_HORVU P55748 SERINE CARBOXYPEPTIDASE II-2 PRECURSOR, mRNA sequence.
CN994881.1:38-58
TCTACCCGATACAGTATAGATGCTCTTAAG38CTTCCAACTGTCAAACCTTGGCGTGCATGGTACGATGATGGGCAGGTTGGA
Mdfrt3049a13.y1 Mdfrt Malus domestica cDNA clone Mdfrt3049a13 5' similar to SW:CP22_HORVU P55748 SERINE CARBOXYPEPTIDASE II-2 PRECURSOR, mRNA sequence.
CO755209.1:93-113
TCTACCCGATACAGTATAGATGCTCTTAAG93CTTCCAACTGTCAAACCTTGGCGTGCATGGTACGATGATGGGCAGGTTGGA
ff_07A04_AA5 Md_fruit-fruit_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD254831.1:180-200
TCTACCCGATACAGTATAGATGCTCTTAAG180CTTCCAACTGTCAAACCTTGGCGTGCATGGT
Mdfws2070E21.g1 Apple_EST_Mdfws Malus domestica cDNA 5' similar to sp|P55748|CP22_HORVU Serine carboxypeptidase II-2 precursor (CP-MII.2) gb|AAB31590.1| CP-MII.2=serine carboxypeptidase [Hordeum vulga
GO509960.1:337-357
TCTACCCGATACAGTATAGATGCTCTTAAG337CTTCCAACTGTCAAACCTTGGCGTGCATGGTACGATGATGGGCAGGTTGGA
Mdfrfu3512E14.g1 Apple_EST_Mdfrfu Malus domestica cDNA 5' similar to sp|P55748|CP22_HORVU Serine carboxypeptidase II-2 precursor (CP-MII.2) gb|AAB31590.1| CP-MII.2=serine carboxypeptidase [Hordeum vul
GO535368.1:211-231
TCTACCCGATACAGTATAGATGCTCTTAAG211CTTCCAACTGTCAAACCTTGGCGTGCATGGTACGATGATGGGCAGGTTGGA
Mdfwj2081G22.g1 Apple_EST_Mdfwj Malus domestica cDNA 5' similar to ref|NP_567854.1| serine carboxypeptidase -related [Arabidopsis thaliana] gb|AAK93635.1| putative serine carboxypeptidase II [Arabidop
GO543294.1:344-364
TCTACCCGATACAGTATAGATGCTCTTAAG344CTTCCAACTGTCAAACCTTGGCGTGCATGGTACGATGATGGGCAGGTTGGA
Md-196 Granny Smith apple skin coloration supression substractive hybridization cDNA library Malus domestica cDNA, mRNA sequence.
JK973988.1:159-179
TCTACCCGATACAGTATAGATGCTCTTAAG159CTTCCAACTGTCAAACCTTGGCGTGCATGGT
TSA: Pyrus communis mRNA, contig: lc2672.
FX611259.1:190-210
TCTACCCGATACAGTATAGATGCTCTTAAG190CTTCCAACTGTCAAACCTTGGCGTGCATGGTACGATGATGGGCAGGTTGGA
Fragaria x ananassa cultivar Benihoppe chromosome 3.
CP139773.1:330883-330903
TCTACCCGATACAGTATAGATTCCCTTAAG330883CTTCCAACTGTCAAACCTTGGTGTGCCTGGTACGATGAGGGGCAGGTAACG
Fragaria x ananassa cultivar Benihoppe chromosome 2.
CP139774.1:876136-876156
TCTACCCGATACAGTATAGATTCCCTTAAG876136CTTCCAACTGTCAAACCTTGGCATGCCTGGTACGATGAGGGGCAGGTAAGG
Fragaria x ananassa cultivar Benihoppe chromosome 1.
CP139775.1:298778-298798
TCTACCCGATACAGTATAGATTCCCTTAAG298778CTTCCAACTGTCAAACCTTGGCGTGCCTGGTATGATGAGGGGCAGGTAAGG
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:11128998-11129018
TCTACCCGATACAGTATAGATGCTCTTAAG11128998CTTCCAACTGTCAAACCTTGGCGTGCATGGTACGATGATGGGCAGGTAAAC
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:10087638-10087658
TCTACCCGATACAGTATAGATGCTCTTAAG10087638CTTCCAACTGTCAAACCTTGGCGTGCATGGTACGATGATGGGCAGGTAAAC
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:10863335-10863355
TCTACCCGATACAGTATAGATGCTCTTAAG10863335CTTCCAACTGTCAAACCTTGGCGTGCATGGTACGATGATGGGCAGGTAAAC
Malus domestica genome assembly, chromosome: 15.
OU696691.1:11088490-11088510
TCTACCCGATACAGTATAGATGCTCTTAAG11088490CTTCCAACTGTCAAACCTTGGCGTGCATGGTACGATGATGGGCAGGTAAAC
Malus domestica genome assembly, chromosome: 15.
OU744556.1:11155276-11155296
TCTACCCGATACAGTATAGATGCTCTTAAG11155276CTTCCAACTGTCAAACCTTGGCGTGCATGGTACGATGATGGGCAGGTAAAC
Malus domestica genome assembly, chromosome: 15.
OU744967.1:11104538-11104558
TCTACCCGATACAGTATAGATGCTCTTAAG11104538CTTCCAACTGTCAAACCTTGGCGTGCATGGTACGATGATGGGCAGGTAAAC
Malus domestica genome assembly, chromosome: 15.
OU745005.1:10892610-10892630
TCTACCCGATACAGTATAGATGCTCTTAAG10892610CTTCCAACTGTCAAACCTTGGCGTGCATGGTACGATGATGGGCAGGTAAAC
Potentilla anserina genome assembly, chromosome: 1.
OW176981.1:343307-343327
TCTACCCGATACAGTATAGACTCCCTTAAG343307CTTCCAACTGTCAAACCTTGGCGTGCCTGGTACGATGAGGGGCAGGTAAGA
Geum urbanum genome assembly, chromosome: 1.
OX326997.1:434405-434425
TCTACCCGGTACAGTATAGATGCTCTTAAG434405CTTCCAACTGTCAAACCTTGGAGTGCCTGGTACGATGATGGGCAGGTAAAG
Geum urbanum genome assembly, chromosome: 7.
OX327003.1:5289832-5289852
TCTACCCGGTACAGTATAGATGCTCTTAAG5289832CTTCCAACTGTCAAACCTTGGAGTGCCTGGTACGATGATGAGCAGGTAAAG
Comarum palustre genome assembly, chromosome: 4.
OX637575.1:409594-409614
TCTACCCGATACAGTATAGATTCCCTTAAG409594CTTCCAACTGTCAAACCTTGGCGTGCCTGGTACGATGAGGGGCAGGTAAGG
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:9247213-9247233
TCTACCCGATACAGTATAGATGCTCTTAAG9247213CTTCCAACTGTCAAACCTTGGCGTGCATGGTACGATGATGGGCAGGTAAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAAGGTTTGACAGTTGGAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAAGGTTTGACAGTTGGAAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.420 | 0.412 | search_plus_done; http://172.18.8.135:50400/match?q=CCAAGGTTTGACAGTTGGAAG&k=0&no_gap=0&offset=0&limit=50
1.054 | 0.633 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCCAACTGTCAAACCTTGG&k=0&no_gap=0&offset=0&limit=40
1.069 | 0.015 | cgi_end;

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