GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:17:06, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CCCG1855.g1 CCCG Cercospora beticola infected sugar beet leaves Beta vulgaris/Cercospora beticola mixed EST library cDNA clone CCCG1855 3', mRNA sequence.
GT743562.1:592-614
AGACAACATCGCAACTTGAATTCGGGCGCA592CCAAGTTTACCCCTTTATCTCTCATCGCCTTCTCCAACCCATCTACACACGTC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392551.1:42346912-42346934
AGACAACATCGCAACTTGAATTCGGGCGCA42346912CCAAGTTTACCCCTTTATCTCTCATCGCCTTCTCCAACCCATCTACACACGTC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 5.
OX392560.1:38231897-38231919
AGACAACATCGCAACTTGAATTCGGGCGCA38231897CCAAGTTTACCCCTTTATCTCTCATCGCCTTCTCCAACCCATCTACACACGTC
E012391-024-012-L08-SP6 MPIZ-ADIS-024-leaf Beta vulgaris cDNA clone 024-012-L08 5-PRIME, mRNA sequence.
BQ586547.1:491-513
GACGTGTGTAGATGGGTTGGAGAAGGCGAT491GAGAGATAAAGGGGTAAACTTGGTGCGCCCGAATTCAAGTTGCGATGTTGTCT
CCCG1855.b1 CCCG Cercospora beticola infected sugar beet leaves Beta vulgaris/Cercospora beticola mixed EST library cDNA clone CCCG1855 5', mRNA sequence.
GT743561.1:518-540
GACGTGTGTAGATGGGTTGGAGAAGGCGAT518GAGAGATAAAGGGGTAAACTTGGTGCGCCCGAATTCAAGTTGCGATGTTGTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCAAGTTTACCCCTTTATCTCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAAGTTTACCCCTTTATCTCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.368 | 0.359 | search_plus_done; http://172.18.8.135:50400/match?q=CCAAGTTTACCCCTTTATCTCTC&k=0&no_gap=0&offset=0&limit=50
0.564 | 0.195 | search_minus_done; http://172.18.8.135:50400/match?q=GAGAGATAAAGGGGTAAACTTGG&k=0&no_gap=0&offset=0&limit=47
0.565 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).