GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Micromys minutus genome assembly, chromosome: X.
OZ004781.1:101273446-101273465
AACTGTCTGTAACTACGGTTTTAGGGCACT101273446CCAATGCCCTTGTCTTGTTTGCATGGGTGCCTACATGCATGTGGTGCACA
RR3BI64TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV552528.1:285-304
TCGTCTAACATTCTTCTTCTTCTTTTGTCT285CCAATGCCCTTGTCTTGTTTCTGATACTTCAAGAGAGAGAGAGAGAGAGA
RS3G092TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD954744.1:287-306
TCGTCTAACATTCTTCTTCTTCTTTTGTCT287CCAATGCCCTTGTCTTGTTTCTGATGCTTCAAGAGAGAGAGAGAGAGAGA
Raphanus sativus mRNA, clone: RSCS02P10, 5' end sequence.
FY446871.1:254-273
TCGTCTAACATTCTTCTTCTTCTTTTGTCT254CCAATGCCCTTGTCTTGTTTCTGATACTTCAAGAGAGAGAGAGAGAGAGA
Rattus norvegicus DNA, BAC clone: RNB1-310O19, 3'end.
DH737766.1:318-337
ACATCTGTATGGAACTCAGTTCTAGGGGAT318CCAATGCCCTTGTCTTGTTTCTGTGAGCATCAGGCTGACCCTGGCATGCG
Rattus norvegicus DNA, BAC clone: RNB2-095H23, 3' end.
FT067330.1:322-341
ACATCTGTATGGAACTCAGTTCTAGGGGAT322CCAATGCCCTTGTCTTGTTTCTGTGAGCATCAGGCTGACCCTGGCATGCG
Rattus norvegicus clone CH230-23O3, WORKING DRAFT SEQUENCE, 3 unordered pieces.
AC125966.6:91834-91853
ACATCTGTATGGAACTCAGTTCTAGGGGAT91834CCAATGCCCTTGTCTTGTTTCTGTGAGCATCAGGCTGACCCTGGCATGCG
Raphanus sativus genome assembly, chromosome: 6.
LR778315.1:7393654-7393673
TCGTCTAACATTCTTCTTCTTCTTTTGTCT7393654CCAATGCCCTTGTCTTGTTTCTGATACTTCAAGAGAGAGAGAGAGAGAGA
Micromys minutus genome assembly, chromosome: 6.
OZ004786.1:80548722-80548741
CACATGCCACGGTCAGCCTGATGCTGATGG80548722AAACAAGACAAGGGCATTGGATCCCCTGGAACTGAGCTCCATACAGATCT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_8137.
FX658598.1:1290-1309
TCTCTCTCTCTCTCTCTCTTGAAGTATCAG1290AAACAAGACAAGGGCATTGGAGACAAAAGAAGAAGAAGAATGTTAGACGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1683.
FX738705.1:1294-1313
TCTCTCTCTCTCTCTCTCTTGAAGTATCAG1294AAACAAGACAAGGGCATTGGAGACAAAAGAAGAAGAAGAATGTTAGACGA
TSA: Raphanus sativus RS07578 mRNA sequence.
JT792125.1:1264-1283
TCTCTCTCTCTCTCTCTCTTGAAGTATCAG1264AAACAAGACAAGGGCATTGGAGACAAAAGAAGAAGAAGAATGTTAGACGA
Raphanus sativus genome assembly, chromosome: 3.
OY743209.1:28128628-28128647
TCTCTCTCTCTCTCTCTCTTGAAGTATCAG28128628AAACAAGACAAGGGCATTGGAGACAAAAGAAGAAGAAGAATGTTAGACGA
Ischnura elegans genome assembly, chromosome: 8.
OV121108.1:78043569-78043588
TTGGTGTGAGAGAGAGGGAGAAGGCTGTTC78043569AAACAAGACAAGGGCATTGGTTCCGATTTGACCGTGAAAGAATGGCTATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAATGCCCTTGTCTTGTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAATGCCCTTGTCTTGTTT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.462 | 0.454 | search_plus_done; http://172.18.8.135:50400/match?q=CCAATGCCCTTGTCTTGTTT&k=0&no_gap=0&offset=0&limit=50
0.600 | 0.138 | search_minus_done; http://172.18.8.135:50400/match?q=AAACAAGACAAGGGCATTGG&k=0&no_gap=0&offset=0&limit=42
0.604 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).