GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 04:40:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CAH1-57C5TV CAA1Ba Cicer arietinum genomic clone CAH1-57C5, genomic survey sequence.
EI890058.1:37-56
TTGTTACGATCCAATTTAATCTTTTTGAGT37CCAATTCTTCGCAGTCCATCATTGGATGCAAAAGAAACCGCACAAACCAA
Trifolium repens isolate ACLI19 chromosome 05_Pall.
CP125845.1:33625986-33626005
TAGATCTCAGTCGAGCGGCAAAGGATGAAA33625986CCAATTCTTCGCAGTCCATCACCGGATGCAAAGGATGAAACCAAAAGGGT
Trifolium repens isolate ACLI19 chromosome 08_0cc.
CP125850.1:64102452-64102471
TTGTTACGGTCCAATTTAATCTTTTTCAGT64102452CCAATTCTTCGCAGTCCATCACCGGATGCAAATGATGAAACCAAAAGTGT
Trifolium repens isolate ACLI19 chromosome 08_Pall.
CP125851.1:56951505-56951524
TTGTTACGGTCCAATTTAATCTTTTTCAGT56951505CCAATTCTTCGCAGTCCATCACCGGATGCAAAGGATGAAACCAAAAGGGT
Trifolium dubium genome assembly, chromosome: 2.
OX638063.1:58839481-58839500
TTGTTTCGGTCCAATTTAATCTTCTTCAGT58839481CCAATTCTTCGCAGTCCATCACTGGATGCAAAAGATGAAACCAAGAGGCT
Trifolium dubium genome assembly, chromosome: 12.
OX638073.1:36219286-36219305
TTGTTTCGGTCCAATTTAATCTTCTTGAGT36219286CCAATTCTTCGCAGTCCATCACTGGATGCAAAGGATGAAACCAAAAGGCT
Trifolium fragiferum genome assembly, chromosome: 4.
OX940792.1:62178361-62178380
TTGTTACGGTCTAATTTGATCTTTTTGAGT62178361CCAATTCTTCGCAGTCCATCACTATCGGATGCAAAGGATGAAACCAAAAG
Cicer arietinum chromosome Ca7.
CP039337.1:919663-919682
TTGGTTTGTGCGGTTTCTTTTGCATCCAAT919663GATGGACTGCGAAGAATTGGACTCAAAAAGATTAAATTGGATCGTAACAA
Cicer arietinum chromosome Ca7.
CP040772.1:919679-919698
TTGGTTTGTGCGGTTTCTTTTGCATCCAAT919679GATGGACTGCGAAGAATTGGACTCAAAAAGATTAAATTGGATCGTAACAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCAATTCTTCGCAGTCCATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAATTCTTCGCAGTCCATC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.148 | 0.139 | search_plus_done; http://172.18.8.135:50400/match?q=CCAATTCTTCGCAGTCCATC&k=0&no_gap=0&offset=0&limit=50
0.181 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=GATGGACTGCGAAGAATTGG&k=0&no_gap=0&offset=0&limit=43
0.182 | 0.001 | cgi_end;

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