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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:30:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Pyrus x bretschneideri Unigene21805_XinShao mRNA sequence.
JR615893.1:584-606
TTGCCTCACCCAATTTCTTCCTCAATTCCG584CCAATTTTCTCTTCCTCCCTGTTAAGTTTTGGAAGTCTCCTTCTATATTCTCC
TSA: Pyrus x bretschneideri Unigene21806_XinShao mRNA sequence.
JR615894.1:584-606
TTGCCTCACCCAATTTCTTCCTCAATTCCG584CCAATTTTCTCTTCCTCCCTGTTAAGTTTTGGAAGTCTCCTTCTATATTCTCC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:24667194-24667216
AAAACCTTACCAATTTCTTCCTCAATTCCG24667194CCAATTTTCTCTTCCTCCCTGTTAAGTTTTGGAAGTCTCCTTCCATATTCTCC
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:22853399-22853421
AAAACCTTACCAATTTCTTCCTCAATTCCG22853399CCAATTTTCTCTTCCTCCCTGTTAAGTTTTGGAAGTCTGCTTCCATATTCTCC
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:23934803-23934825
AAAACCTTACCAATTTCTTCCTCAATTCCG23934803CCAATTTTCTCTTCCTCCCTGTTAAGTTTTGGAAGTCTCCTTCCATATTCTCC
Malus domestica genome assembly, chromosome: 5.
OU696681.1:23322460-23322482
AAAACCTTACCAATTTCTTCCTCAATTCCG23322460CCAATTTTCTCTTCCTCCCTGTTAAGTTTTGGAAGTCTCCTTCCATATTCTCC
Malus domestica genome assembly, chromosome: 5.
OU744546.1:23965106-23965128
AAAACCTTACCAATTTCTTCCTCAATTCCG23965106CCAATTTTCTCTTCCTCCCTGTTAAGTTTTGGAAGTCTCCTTCCATATTCTCC
Malus domestica genome assembly, chromosome: 5.
OU744995.1:25203933-25203955
AAAACCTTACCAATTTCTTCCTCAATTCCG25203933CCAATTTTCTCTTCCTCCCTGTTAAGTTTTGGAAGTCTCCTTCCATATTCTCC
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH068_03113m, 5' end sequence.
AB450738.1:366-388
GGAGAATATAGAAGGAGACTTCCAAAACTT366AACAGGGAGGAAGAGAAAATTGGCAGAATTGAGGAAGAAATTGGGTGAGGCAA
030109ABMA006028HT (ABMA) M9 phloem Malus domestica cDNA clone ABMA006028, mRNA sequence.
CN913886.1:311-333
GGAGAATATGGAAGGAGACTTCCAAAACTT311AACAGGGAGGAAGAGAAAATTGGCGGAATTGAGGAAGAAATTGGGTGAGGCAA
030109ABMA006132HT (ABMA) M9 phloem Malus domestica cDNA clone ABMA006132, mRNA sequence.
CN913941.1:311-333
GGAGAATATGGAAGGAGACTTCCAAAACTT311AACAGGGAGGAAGAGAAAATTGGCGGAATTGAGGAAGAAATTGGGTGAGGCAA
Mdfrt3040o15.y3 Mdfrt Malus domestica cDNA clone Mdfrt3040o15 5' similar to TR:Q9ZVX7 Q9ZVX7 HYPOTHETICAL 38.7 KDA PROTEIN, mRNA sequence.
CO868125.1:306-328
GGAGAATATGGAAGGAGACTTCCAAAACTT306AACAGGGAGGAAGAGAAAATTGGCGGAATTGAGGAAGAAATTGGGTGAGGCAA
Mdlv3_4033b09.y1 Mdlv3 Malus domestica cDNA clone Mdlv3_4033b09 5' similar to TR:Q9ZVX7 Q9ZVX7 HYPOTHETICAL 38.7 KDA PROTEIN, mRNA sequence.
CV882369.1:365-387
GGAGAATATGGAAGGAGACTTCCAAAACTT365AACAGGGAGGAAGAGAAAATTGGCGGAATTGAGGAAGAAATTGGGTGAGGCAA
Mdfbg8015F13.g1 Apple_EST_Mdfbg Malus hybrid rootstock cDNA 5' similar to ref|NP_565396.1| expressed protein [Arabidopsis thaliana] gb|AAC64217.2| Expressed protein [Arabidopsis thaliana] gb|AAM15083.
GO517758.1:317-339
GGAGAATATGGAAGGAGACTTCCAAAACTT317AACAGGGAGGAAGAGAAAATTGGCGGAATTGAGGAAGAAATTGGGTGAGGCAA
TSA: Pyrus pyrifolia mRNA, contig: contig_7352.
FX397727.1:395-417
GGAGAATATAGAAGGAGACTTCCAAAACTT395AACAGGGAGGAAGAGAAAATTGGCAGAATTGAGGAAGAAATTGGGTGAGGCAA
TSA: Pyrus communis mRNA, contig: lc37849.
FX645396.1:166-188
GGAGAATATGGAAGGCGACTTCCAAAACTT166AACAGGGAGGAAGAGAAAATTGGCGGAATTGAGGAAGAAATTGGGTGAGGCGA
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:21422217-21422239
GGAGAATATGGAAGGAGACTTCCAAAACTT21422217AACAGGGAGGAAGAGAAAATTGGCGGAATTGAGGAAGAAATTGGTAAGGTTTT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:22224551-22224573
GGAGAATATGGAAGGAGACTTCCAAAACTT22224551AACAGGGAGGAAGAGAAAATTGGCGGAATTGAGGAAGAAATTGGTAAGGTTTT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:21030015-21030037
GGAGAATATGGAAGGAGACTTCCAAAACTT21030015AACAGGGAGGAAGAGAAAATTGGCGGAATTGAGGAAGAAATTGGTAAGGTTTT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:22438646-22438668
GGAGAATATGGAAGGAGACTTCCAAAACTT22438646AACAGGGAGGAAGAGAAAATTGGCGGAATTGAGGAAGAAATTGGTAAGGTTTT
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:22212492-22212514
GGAGAATATGGAAGGAGACTTCCAAAACTT22212492AACAGGGAGGAAGAGAAAATTGGCGGAATTGAGGAAGAAATTGGTAAGGTTTT
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:22590028-22590050
GGAGAATATGGAAGGAGACTTCCAAAACTT22590028AACAGGGAGGAAGAGAAAATTGGCGGAATTGAGGAAGAAATTGGTAAGGTTTT
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:17095478-17095500
GGAGAATATGGAAGGAGACTTCCAAAACTT17095478AACAGGGAGGAAGAGAAAATTGGCGGAATTGAGGAAGAAATTGGTAAGGTTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAATTTTCTCTTCCTCCCTGTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAATTTTCTCTTCCTCCCTGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.128 | 0.119 | search_plus_done; http://172.18.8.135:50400/match?q=CCAATTTTCTCTTCCTCCCTGTT&k=0&no_gap=0&offset=0&limit=50
0.382 | 0.254 | search_minus_done; http://172.18.8.135:50400/match?q=AACAGGGAGGAAGAGAAAATTGG&k=0&no_gap=0&offset=0&limit=42
0.391 | 0.009 | cgi_end;

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