GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 21:52:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:10218148-10218167
GATCTCTATCTATGCTCATATATGTCATAC10218148CCACAAGAAACTTGACGATCCTTGCTTTTACATTTTAACTAAAGCGCTTT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:9704578-9704597
GATCTCTATCTATGCTCATATATGTCATAC9704578CCACAAGAAACTTGACGATCCTTGCTTTTACATTTTAACTAAAGCGCTTT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:14344834-14344853
GCTTGATCTCTATGCTCATATTTGTCATAC14344834CCACAAGAAACTTGACGATCCATGCTTTTACATTTTAACTAAAGCGTTTT
Brassica rapa genome, scaffold: A09.
LR031568.1:9731859-9731878
GATCTCTATCTATGCTCATATATGTCATAC9731859CCACAAGAAACTTGACGATCCTTGCTTTTACATTTTAACTAAAGCGCTTT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:14249317-14249336
GCTTGATCTCTATGCTCATATTTGTCATAC14249317CCACAAGAAACTTGACGATCCATGCTTTTACATTTTAACTAAAGCGTTTT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:10047604-10047623
GATCTCTATCTATGCTCATATATGTCATAC10047604CCACAAGAAACTTGACGATCCTTGCTTTTACATTTTAACTAAAGCGCTTT
KBrH119B19 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT011621.1:574-593
AAAGCGCTTTAGTTAAAATGTAAAAGCAAG574GATCGTCAAGTTTCTTGTGGGTATGACATATATGAGCATAGATAGAGATC
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:54784375-54784394
AAAACGCTTTAGTTAAAATGTAAAAGCATG54784375GATCGTCAAGTTTCTTGTGGGTATGACAAATATGAGCATAGAGATCAAGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCACAAGAAACTTGACGATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCACAAGAAACTTGACGATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.125 | 0.116 | search_plus_done; http://172.18.8.135:50400/match?q=CCACAAGAAACTTGACGATC&k=0&no_gap=0&offset=0&limit=50
0.160 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=GATCGTCAAGTTTCTTGTGG&k=0&no_gap=0&offset=0&limit=44
0.161 | 0.001 | cgi_end;

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