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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:21:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Hevea brasiliensis Unigene21866_HB.Hebrbark mRNA sequence.
JR366046.1:563-585
GATTGTTGTCAAAATAAAGCAATGGTTTCT563CCACACTCTCACCAACTGCCTTGAGCCCAGCAAAGTGGATAACAGCATCAAAT
TSA: Hevea brasiliensis contig69909, mRNA sequence.
JT933855.1:1075-1097
GATTGTTGTCAAAATAAAACAATGGTTTCT1075CCACACTCTCACCAACTGCCTTGAGCCCAGCAAAGTGGATAACAGCATCAAAT
TSA: Hevea brasiliensis contig40607, mRNA sequence.
JT936203.1:1075-1097
GATTGTTGTCAAAATAAAACAATGGTTTCT1075CCACACTCTCACCAACTGCCTTGAGCCCAGCAAAGTGGATAACAGCATCAAAT
TSA: Hevea brasiliensis contig69910, mRNA sequence.
JT936254.1:1075-1097
GATTGTTGTCAAAATAAAGCAATGGTTTCT1075CCACACTCTCACCAACTGCCTTGAGCCCAGCAAAGTGGATAACAGCATCAAAT
Manihot esculenta mRNA, clone: CAS01_002_D16, 5'end.
DB920489.1:374-396
ATTTGATGCTGTCATCCACTTTGCTGGGCT374CAAGGCAGTTGGTGAGAGTGTGGAGAAGCCATTGCTTTATTTTGATAACAATC
CV02027B1B06.f1 CV02-normalized library Manihot esculenta cDNA clone CV02027B1B06.f1, mRNA sequence.
DV458486.1:405-427
ATTTGATGCTGTCATCCACTTTGCTGGGCT405CAAGGCAGTTGGTGAGAGTGTGGAGAAGCCATTGCTTTATTTTGATAACAATC
Y75E11 YLX600 Hevea brasiliensis cDNA clone Y75E11 5', mRNA sequence.
EC600511.1:385-407
ATTTGACTCTGTCATCCACTTTGCTGGGCT385CAAGGCAGTTGGTGAGAGTGTGGAGAAACCGCTGCTTTATTTTGACAACAATC
Y02F06 YLX600 Hevea brasiliensis cDNA clone Y02F06 5', mRNA sequence.
EC606110.1:377-399
ATTTGACTCTGTCATCCACTTTGCTGGGCT377CAAGGCAGTTGGTGAGAGTGTGGAGAAACCGCTGCTTTATTTTGACAACAATC
U_SX-090909_plate58d10.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG969921.1:56-78
ATTTGATGCTGTCATCCACTTTGCTGGGCT56CAAGGCAGTTGGTGAGAGTGTGGAGAAGCCATTGCTTTATTTTGATAACAATC
U_SX-090916_plate56m08.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG974611.1:56-78
ATTTGATGCTGTCATCCACTTTGCTGGGCT56CAAGGCAGTTGGTGAGAGTGTGGAGAAGCCATTGCTTTATTTTGATAACAATC
U_SX-PL011N01_A_plate21o23.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG979851.1:56-78
ATTTGATGCTGTCATCCACTTTGCTGGGCT56CAAGGCAGTTGGTGAGAGTGTGGAGAAGCCATTGCTTTATTTTGATAACAATC
U_SX-PL011N01_A_plate5e12.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG989330.1:56-78
ATTTGATGCTGTCATCCACTTTGCTGGGCT56CAAGGCAGTTGGTGAGAGTGTGGAGAAGCCATTGCTTTATTTTGATAACAATC
U_UZ-100602_plate13e16.b1 Full-length enriched cDNA library of cassava MPER417-003 Manihot esculenta subsp. peruviana cDNA, mRNA sequence.
JG991644.1:250-272
ATTTGATGCTGTCATCCACTTTGCTGGGCT250CAAGGCAGTTGGTGAGAGTGTGGAGAAGCCATTGCTTTATTTTGATAACAATC
TSA: Hevea brasiliensis contig44237, mRNA sequence.
JT935704.1:397-419
ATTTGACTCTGTCATCCACTTTGCTGGGCT397CAAGGCAGTTGGTGAGAGTGTGGAGAAACCGCTGCTTTATTTTGACAACAATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCACACTCTCACCAACTGCCTTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCACACTCTCACCAACTGCCTTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.193 | 0.185 | search_plus_done; http://172.18.8.135:50400/match?q=CCACACTCTCACCAACTGCCTTG&k=0&no_gap=0&offset=0&limit=50
0.995 | 0.802 | search_minus_done; http://172.18.8.135:50400/match?q=CAAGGCAGTTGGTGAGAGTGTGG&k=0&no_gap=0&offset=0&limit=46
1.002 | 0.007 | cgi_end;

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