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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:18:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 541 from patent US 9890389.
MI429193.1:1133-1155
TGGAAATGGCTATGCTCCAGTGCTTGACTG1133CCACACTTCTCATATTGCTGTCAAATTTGCCGAGCTTTTGACCAAGATTGACA
Sequence 663 from patent US 9890389.
MI429315.1:1147-1169
TGGAAATGGATATGCGCCAGTGCTCGACTG1147CCACACTTCTCATATTGCTGTCAAGTTTGCTGAGATCTTGACCAAGATTGACA
Sequence 541 from patent US 10597672.
MO984115.1:1133-1155
TGGAAATGGCTATGCTCCAGTGCTTGACTG1133CCACACTTCTCATATTGCTGTCAAATTTGCCGAGCTTTTGACCAAGATTGACA
Sequence 663 from patent US 10597672.
MO984237.1:1147-1169
TGGAAATGGATATGCGCCAGTGCTCGACTG1147CCACACTTCTCATATTGCTGTCAAGTTTGCTGAGATCTTGACCAAGATTGACA
Sequence 541 from patent US 11352636.
OO260832.1:1133-1155
TGGAAATGGCTATGCTCCAGTGCTTGACTG1133CCACACTTCTCATATTGCTGTCAAATTTGCCGAGCTTTTGACCAAGATTGACA
Sequence 663 from patent US 11352636.
OO260954.1:1147-1169
TGGAAATGGATATGCGCCAGTGCTCGACTG1147CCACACTTCTCATATTGCTGTCAAGTTTGCTGAGATCTTGACCAAGATTGACA
Ljirnpest00-010 Ljirnp Lambda HybriZap two-hybrid library Lotus japonicus cDNA clone 61-16-4 5' similar to elongation factor 1-alpha, mRNA sequence.
AI967306.1:92-114
TGGAAATGGCTATGCTCCAGTGCTTGACTG92CCACACTTCTCATATTGCTGTCAAATTTGCCGAGCTTTTGACCAAGATTGACA
Lotus japonicus cDNA, clone: LjImfb-c04, 5' end, expressed in flower bud.
AU251552.1:277-299
TGGAAATGGCTATGCTCCAGTGCTTGACTG277CCACACTTCTCATATTGCTGTCAAATTTGCCGAGCTTTTGACCAAGATTGACA
Lotus japonicus cDNA clone:MWM219h02_r, 5' end.
AV412456.1:265-287
TGGAAATGGCTATGCTCCAGTGCTTGACTG265CCACACTTCTCATATTGCTGTCAAATTTGCCGAGCTTTTGACCAAGATTGACA
LjNEST51h12r Lotus japonicus nodule library 5 and 7 week-old Lotus japonicus cDNA 5', mRNA sequence.
BI418977.1:420-442
TGGAAATGGCTATGCTCCAGTGCTTGACTG420CCACACTTCTCATATTGCTGTCAAATTTGCCGAGCTTTTGACCAAGATTGACA
LjNEST55b6r Lotus japonicus nodule library 5 and 7 week-old Lotus japonicus cDNA 5', mRNA sequence.
BI420281.1:166-188
TGGAAATGGCTATGCTCCAGTGCTTGACTG166CCACACTTCTCATATTGCTGTCAAATTTGCCGAGCTTTTGACCAAGATTGACA
LjNEST56a3r Lotus japonicus nodule library 5 and 7 week-old Lotus japonicus cDNA 5', mRNA sequence.
BI420352.1:166-188
TGGAAATGGCTATGCTCCAGTGCTTGACTG166CCACACTTCTCATATTGCTGTCAAATTTGCCGAGCTTTTGACCAAGATTGACA
LjNEST57h4r Lotus japonicus nodule library 5 and 7 week-old Lotus japonicus cDNA 5', mRNA sequence.
BI420503.1:166-188
TGGAAATGGCTATGCTCCAGTGCTTGACTG166CCACACTTCTCATATTGCTGTCAAATTTGCCGAGCTTTTGACCAAGATTGACA
CeSi_F4_T3_E12_088 Ceratonia siliqua flowers cDNA library Ceratonia siliqua cDNA clone CeSi_F4_E12_088, mRNA sequence.
FD381854.1:483-505
AGGAAATGGCTATGCCCCTGTGCTTGATTG483CCACACTTCTCATATTGCTGTCAAGTTTGCCGAACTGTTGACCAAGATTGATA
454GmaGlobSeed480640 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD737991.1:152-174
TGGAAATGGCTATGCCCCTGTCCTCGACTG152CCACACTTCTCATATTGCTGTCAAGTTTGCTGAACTCATGACCAAGATTGACA
Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:116027711-116027733
TGGAAATGGCTATGCTCCAGTGCTTGACTG116027711CCACACTTCTCATATTGCTGTCAAATTTGCCGAGCTTTTGACCAAGATTGACA
Lotus japonicus cDNA, clone:MF100d03_f, 3' end.
BP033492.1:519-541
TGTCAATCTTGGTCAAAAGCTCGGCAAATT519TGACAGCAATATGAGAAGTGTGGCAGTCAAGCAC
Lotus japonicus cDNA, clone:MFB035g06_f, 3' end.
BP036595.1:440-462
TGTCAATCTTGGTCAAAAGCTCGGCAAATT440TGACAGCAATATGAGAAGTGTGGCAGTCAAGCACTGGAGC
Lotus japonicus cDNA, clone:SPD096g07_f, 3' end.
BP051701.1:437-459
TGTCAATCTTGGTCAAAAGCTCGGCAAATT437TGACAGCAATATGAGAAGTGTGGCAGTCAAGCACTGGAGCATAGCCATTTCCA
Lotus japonicus cDNA, clone:SPDL041b11_f, 3' end.
BP054567.1:428-450
TGTCAATCTTGGTCAAAAGCTCGGCAAATT428TGACAGCAATATGAGAAGTGTGGCAGTCAAGCACTGGAGCATAGCCATTTCCA
Lotus japonicus cDNA, clone:SPDL098f04_f, 3' end.
BP058172.1:449-471
TGTCAATCTTGGTCAAAAGCTCGGCAAATT449TGACAGCAATATGAGAAGTGTGGCAGTCAAGCACTGGAGCATAGCCATTTCCA
Solanum melongena mRNA, clone: AE001M01, 3'end, expressed in ovary at anthesis.
FS000441.1:557-579
TGTCAATCTTGGTCAAGATCTCAGCAAACT557TGACAGCAATATGAGAAGTGTGGCAG
Solanum melongena mRNA, clone: AE003G08, 3'end, expressed in ovary at anthesis.
FS001383.1:559-581
TGTCAATCTTGGTCAAGATCTCAGCAAACT559TGACAGCAATATGAGAAGTGTGGCAGTCGAGCACTGGCGCATATCCATTTCCA
Solanum melongena mRNA, clone: YFR02F09, 3'end, expressed in fruit at 2w after anthesis.
FS095239.1:564-586
TGTCAATCTTGGTCAAGATCTCAGCAAACT564TGACAGCAATATGAGAAGTGTGGCAGTCGAGCACTGGCGCATATCCATTTCCA
Lotus japonicus genomic DNA, chromosome 1, clone: LjT28C03, TM1818.
AP010268.1:10792-10814
TGTCAATCTTGGTCAAAAGCTCGGCAAATT10792TGACAGCAATATGAGAAGTGTGGCAGTCAAGCACTGGAGCATAGCCATTTCCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCACACTTCTCATATTGCTGTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCACACTTCTCATATTGCTGTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.678 | 0.670 | search_plus_done; http://172.18.8.135:50400/match?q=CCACACTTCTCATATTGCTGTCA&k=0&no_gap=0&offset=0&limit=50
1.075 | 0.397 | search_minus_done; http://172.18.8.135:50400/match?q=TGACAGCAATATGAGAAGTGTGG&k=0&no_gap=0&offset=0&limit=34
1.081 | 0.006 | cgi_end;

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