GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 21:03:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Beta vulgaris Locus_6385_Transcript_1/1_Confidence_1.000_Length_2201 mRNA sequence.
JP497669.1:1263-1283
CAAAGAACCATATCAGCCCGAAACTCCTGC1263CCACCTGCATAAACCAACACCCCGTCGTCCCCATACCTAATGCTCTCCACT
Chenopodium album genome assembly, chromosome: 9.
OX419216.1:69280470-69280490
CACAGAACCATATCCGCCCGAAACTCCTGC69280470CCACCTGCATAAACCAACACCCCATCATCCCCATACCTAATGCTCTCCACC
Chenopodium album genome assembly, chromosome: 17.
OX419224.1:47670275-47670295
CAGAGAACCATATCTGCCCGAAACTCCTGC47670275CCACCTGCATAAACCAACACCCCATCATCCCCATACCTAATGCTCTCCACC
Chenopodium album genome assembly, chromosome: 27.
OX419234.1:33354482-33354502
CACAGAACCATATCAGCCCGAAATTCCTGC33354482CCACCTGCATAAACCAACACCCCATCATCCCCATACCTAATGCTCTCCACC
SBA036_E03.f Sugar beet BAC library USH20 (Code SBA) Beta vulgaris genomic clone SBA036_E03 5', genomic survey sequence.
ED569798.1:311-331
AGTGGAGAGCATTAGGTATGGGGACGACGG311GGTGTTGGTTTATGCAGGTGGGCAGGAGTTTCGGGCTGATATGGTTCTTTG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 9.
OX392555.1:40523886-40523906
AGTGGAGAGCATTAGGTATGGGGACGACGG40523886GGTGTTGGTTTATGCAGGTGGGCAGGAGTTTCGGGCTGATATGGTTCTTTG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 9.
OX392564.1:44216905-44216925
GGTGGAGAGCATTAGGTATGGGGACGACGG44216905GGTGTTGGTTTATGCAGGTGGGCAGGAGTTTCGGGCGGATATGGTTCTTTG
Agrostemma githago genome assembly, chromosome: 5.
OY288243.1:2795016-2795036
TGTGGAGAGCATTAGGTATGGGGTTGATGG2795016GGTGTTGGTTTATGCAGGTGGGCAGGAGTTTAGGGCTGACATGGTGCTATG
Agrostemma githago genome assembly, chromosome: 23.
OY288261.1:2785714-2785734
TGTGGAGAGCATTAGGTATGGGGTTGATGG2785714GGTGTTGGTTTATGCAGGTGGGCAGGAGTTTAGGGCTGACATGGTACTATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCACCTGCATAAACCAACACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCACCTGCATAAACCAACACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.112 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=CCACCTGCATAAACCAACACC&k=0&no_gap=0&offset=0&limit=50
0.158 | 0.046 | search_minus_done; http://172.18.8.135:50400/match?q=GGTGTTGGTTTATGCAGGTGG&k=0&no_gap=0&offset=0&limit=46
0.161 | 0.004 | cgi_end;

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