GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:46:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EG-A11_005_D08 Oil palm abnormal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN600012.1:197-220
GCACTTCTTAGTTTTAGATTACAAGCAAAA197CCACGCACTTAAGATCCCATTTCGATTTACACATACAGCATCGTGCTAACATAA
OPMF00519 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 121-D11-T3.seq, mRNA sequence.
EL684282.1:40-63
GCACTTCTTAGTTTTAGATTACAAGCAAAA40CCACGCACTTAAGATCCCATTTCGATTTTCACATACAGCATCGTGCTAACATAA
pOP-EO08518_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO08518 5', mRNA sequence.
EY411104.1:58-81
GCACTTCTTAGTTTTAGATTACAAGCAAAA58CCACGCACTTAAGATCCCATTTCGATTTACACATACAGCATCGTGCTAACATAA
TSA: Elaeis guineensis isotig02390.Elguifruit mRNA sequence.
JO089643.1:96-119
GCACTTCTTAGTTTTAGATTACAAGCAAAA96CCACGCACTTAAGATCCCATTTCGATTTTCACATACAGCATCGTGCTAACATAA
OPMF01455 Elaeis guineensis mature flower 26 cm Elaeis guineensis cDNA clone 6-D01-T3.seq, mRNA sequence.
EL685215.1:337-360
TTATGTTAGCACGATGCTGTATGTGAAAAT337CGAAATGGGATCTTAAGTGCGTGGTTTTGCTTGTAATCTAAAACTAAGAAGTGC
OPVM00399 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone 86-C02-T3.seq, mRNA sequence.
EL686793.1:480-503
TTATGTTAGCACGATGCTGTATGTGTAAAT480CGAAATGGGATCTTAAGTGCGTGGTTTTGCTTGTAATCTAAAACTAAGAAGTGC
OPR00487 Elaeis guineensis root Elaeis guineensis cDNA clone PLATE208-D1-T3.seq, mRNA sequence.
EL690456.1:555-578
TTATGTTAGCACGATGCTGTATGTGAAAAT555CGAAATGGGATCTTAAGTGCGTGGTTTTGCTTGTAATCTAAAACTAAGAAGTGC
pOP-CEO02817_EST_C_1_pSK_SK CEO (Oil Palm Embryogenic Callus) Elaeis guineensis cDNA clone pOP-CEO02817 5', mRNA sequence.
EY396870.1:298-321
TTATGTTAGCACGATGCTGTATGTGTAAAT298CGAAATGGGATCTTAAGTGCGTGGTTTTGCTTGTAATCTAAAACTAAGAAGTGC
pOP-EAP00536_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP00536 5', mRNA sequence.
EY405584.1:428-451
TTATGTTAGCACGATGCTGTATGTGTAAAT428CGAAATGGGATCTTAAGTGCGTGGTTTTGCTTGTAATCTAAAACTAAGAAGTGC
pOP-EAP00639_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP00639 5', mRNA sequence.
EY405927.1:456-479
TTATGTTAGCACGATGCTGTATGTGTAAAT456CGAAATGGGATCTTAAGTGCGTGGTTTTGCTTGTAATCTAAAACTAAGAAGTGC
pOP-EAP03667_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP03667 5', mRNA sequence.
EY406727.1:382-405
TTATGTTAGCACGATGCTGTATGTGAAAAT382CGAAATGGGATCTTAAGTGCGTGGTTTTGCTTGTAATCTAAAACTAAGAAGTGC
pOP-EAP02386_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP02386 5', mRNA sequence.
EY406841.1:432-455
TTATGTTAGCACGATGCTGTATGTGAAAAT432CGAAATGGGATCTTAAGTGCGTGGTTTTGCTTGTAATC
pOP-EAP00638_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP00638 5', mRNA sequence.
EY407407.1:462-485
TTATGTTAGCACGATGCTGTATGTGTAAAT462CGAAATGGGATCTTAAGTGCGTGGTTTTGCTTGTAATCTAAAACTAAGAAGTGC
pOP-EAP01020_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP01020 5', mRNA sequence.
EY407763.1:83-106
TTATGTTAGCACGATGCTGTATGTGTAAAT83CGAAATGGGATCTTAAGTGCGTGGTTTTGCTTGTAATCTAAAACTAAGAAGTGC
pOP-EO07300_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO07300 5', mRNA sequence.
EY412263.1:687-710
TTATGTTAGCACGATGCTGTATGTGAAAAT687CGAAATGGGATCTTAAGTGCGTGGTTTTGCTTG
pOP-EO04805_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO04805 5', mRNA sequence.
EY412531.1:514-537
TTATGTTAGCACGATGCTGTATGTGAAAAT514CGAAATGGGATCTTAAGTGCGTGGTTTTGCTTGTAATC
Elaeis guineensis clone estEgSNP34 catalase 2 (CAT2) mRNA, complete cds.
JX438716.1:1648-1671
TTATGTTAGCACGATGCTGTATGTGAAAAT1648CGAAATGGGATCTTAAGTGCGTGGTTTTGCTTGTAATCTAAAACTAAGAAGTGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCACGCACTTAAGATCCCATTTCG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCACGCACTTAAGATCCCATTTCG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.455 | 0.447 | search_plus_done; http://172.18.8.135:50400/match?q=CCACGCACTTAAGATCCCATTTCG&k=0&no_gap=0&offset=0&limit=50
1.504 | 1.049 | search_minus_done; http://172.18.8.135:50400/match?q=CGAAATGGGATCTTAAGTGCGTGG&k=0&no_gap=0&offset=0&limit=46
1.513 | 0.008 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).