GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 19:05:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:46015092-46015111
TGGTGGTAGTTCCCAAGTTCATTCTCAACT46015092CCACGTGATATTTGAGGGTAATGTTGAAAATATAATTTTTCATTTCTGTC
Brassica napus genome assembly, chromosome: A01.
HG994355.1:30591113-30591132
TGGTGGTAGTTCCCAAGTTCATTCTCAACT30591113CCACGTGATATTTGAGGGTAATGTTGAAAATATAATTTTTCATTTCAAGT
Brassica rapa genome, scaffold: A01.
LR031571.1:36571431-36571450
TGGTGGTAGTTCCCAAGTTCGTTCTCAACT36571431CCACGTGATATTTGAGGGTAATGTTGAAAATATAATTTTTCATTTCAAGT
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:50166734-50166753
TGGTGGTAGTTCCCAAGTTCATTCTCAACT50166734CCACGTGATATTTGAGGGTAATGTTGAAAACATAATTTTTCATTTCAAGT
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:1912175-1912194
ACTTGAAATGAAAAATTATATTTTCAACAT1912175TACCCTCAAATATCACGTGGAGTTGAGAATGAACTTGGGAACTACCACCA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:1006890-1006909
TTGAAAATGAAAATTTTATACTTACAACAT1006890TACCCTCAAATATCACGTGGAGTTGAGAATGAACTTGGGAACTATCACGG
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:37384199-37384218
ACTTGAAATGAAAAATTATATTTTCAACAT37384199TACCCTCAAATATCACGTGGAGTTGAGAACGAACTTGGGAACTACCACCA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:1006890-1006909
TTGAAAATGAAAATTTTATACTTACAACAT1006890TACCCTCAAATATCACGTGGAGTTGAGAATGAACTTGGGAACTATCACGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCACGTGATATTTGAGGGTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCACGTGATATTTGAGGGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.117 | 0.108 | search_plus_done; http://172.18.8.135:50400/match?q=CCACGTGATATTTGAGGGTA&k=0&no_gap=0&offset=0&limit=50
0.145 | 0.028 | search_minus_done; http://172.18.8.135:50400/match?q=TACCCTCAAATATCACGTGG&k=0&no_gap=0&offset=0&limit=46
0.147 | 0.003 | cgi_end;

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