GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 20:32:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 12.
CP141921.1:12469165-12469186
AAAAGCCTTCCTCACTTCTCTTCCTTCCAA12469165CCACTCGCCAAAGTTAGTATTTCCATGGGATTCTCCATCATGCGCAGCATCA
Malus hybrid cultivar cultivar Flame chromosome 12.
CP141938.1:12533217-12533238
AAACAACTTCCTCACTTCTCTTCCTTCTAA12533217CCACTCGCCAAAGTTAGTATTTCCATGGGATTCTGCATCATGCGCAGCATCA
Malus x robusta genome assembly, chromosome: 13.
OY720337.1:12459022-12459043
AAAAGCCTTCCTCACTTCTCTTCCTTCCAA12459022CCACTCGCCAAAGTTAGTATTTCCATGGGATTCTCCATCATGCGCAGCATCA
Mddb5003n19.y1 Mddb Malus domestica cDNA clone Mddb5003n19 5', mRNA sequence.
CO723666.1:304-325
TGATGCTGCGCATGATGGAGAATCCCATGG304AAATACTAACTTTGGCGAGTGGTTGGAAGGAAGAGAAGTGAGGAAGGCTTTT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141964.1:19832988-19833009
TGATGCTGCGCATGATGGAGAATCCCATGG19832988AAATACTAACTTTGGCGAGTGGTTGGAAGGAAGAGAAGTGAGGAAGGCTTTT
Malus hybrid cultivar cultivar Royalty chromosome 12.
CP141981.1:19983141-19983162
TGATGCTGCGCATGATGCAGAATCCCATGG19983141AAATACTAACTTTGGCGAGTGGTTGGAAGGAAGAGAAGTGAGGAAGTTGTTT
Malus hybrid cultivar cultivar SH6 chromosome 12.
CP143369.1:19747335-19747356
TGATGCTGTGCATGATGCAGAATCCCATGG19747335AAATACTAACTTTGGCGAGTGGTTGGAAGGAAGAGAAGTGAGGAAGGCTTTT
Malus sylvestris genome assembly, chromosome: 12.
OU696514.1:19390515-19390536
TGATGCTGTGCATGATGCAGAATCCCATGG19390515AAATACTAACTTTGGCGAGTGGTTGGAAGGAAGAGAAGTGAGGAAGGCTTTT
Malus domestica genome assembly, chromosome: 12.
OU696688.1:19450942-19450963
TGATGCTGCGCATGATGGAGAATCCCATGG19450942AAATACTAACTTTGGCGAGTGGTTGGAAGGAAGAGAAGTGAGGAAGGCTTTT
Malus domestica genome assembly, chromosome: 12.
OU744553.1:19595227-19595248
TGATGCTGTGCATGATGCAGAATCCCATGG19595227AAATACTAACTTTGGCGAGTGGTTGGAAGGAAGAGAAGTGAGGAAGGCTTTT
Malus domestica genome assembly, chromosome: 12.
OU744964.1:19091763-19091784
TGATGCTGCGCATGATGGAGAATCCCATGG19091763AAATACTAACTTTGGCGAGTGGTTGGAAGGAAGAGAAGTGAGGAAGGCTTTT
Malus domestica genome assembly, chromosome: 12.
OU745002.1:19318241-19318262
TGATGCTGCGCATGATGGAGAATCCCATGG19318241AAATACTAACTTTGGCGAGTGGTTGGAAGGAAGAGAAGTGAGGAAGGCTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCACTCGCCAAAGTTAGTATTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCACTCGCCAAAGTTAGTATTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.103 | 0.094 | search_plus_done; http://172.18.8.135:50400/match?q=CCACTCGCCAAAGTTAGTATTT&k=0&no_gap=0&offset=0&limit=50
0.230 | 0.127 | search_minus_done; http://172.18.8.135:50400/match?q=AAATACTAACTTTGGCGAGTGG&k=0&no_gap=0&offset=0&limit=47
0.237 | 0.006 | cgi_end;

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