GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 16:08:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Porphyra yezoensis cDNA, clone:PFL025f09_r, 5'end.
AU192094.1:125-144
CCAGGGGCGCCGCAGCAACAGCGGTTCGCG125CCACTTCCATCGCTGTCTTCGCTGGGCGTCGGTGGACCTGGCGGGCCCCG
Warburgia ugandensis isolate CL-2023a chromosome 5.
CP141130.1:32836918-32836937
TTGCCGAAATAAGGTTGTCAATCTTTTTGT32836918CCACTTCCATCGCTGTCTTCTTATCCTCCCTCTTACTGTGATCAGCATGC
Fraxinus pennsylvanica genome assembly, chromosome: 22.
OU503057.1:4232548-4232567
AAAGCTGCAGACCACACTCTCTCTGACACC4232548CCACTTCCATCGCTGTCTTCCTTTGCCCCAGGAAAAAAGAAAAAGATCAG
3_Tms_b3v08.
OB792876.1:249112-249131
CGTTTGCCTCCAATATTGCCGGCGGCTTTT249112CCACTTCCATCGCTGTCTTCTGCCACGAGCTGCCGCATGAGATTGGTTAG
3_Tce_b3v08.
OC316806.1:290428-290447
CGTTTGCCTCCAATATTGCCGGCGGTTTTT290428CCACTTCCATCGCTGTCTTCTGCCACGAGCTGCCGCATGAGATTGGTTAG
Brachypalpus laphriformis genome assembly, chromosome: 1.
OX246753.1:232134295-232134314
CTTTCCAGGAGTGTGTTGTTCGCGTCTGAA232134295CCACTTCCATCGCTGTCTTCTTCGCTGATTCCTGGAACCCTTCTGTGATG
Sepiola atlantica genome assembly, chromosome: 39.
OY744553.1:4054233-4054252
AAGAAACGAATGCAAAAAACAACAGAATAT4054233CCACTTCCATCGCTGTCTTCGATGAAATTCTAAAAATCGATTTCTTCAGA
Watersipora subatra genome assembly, chromosome: 7.
OY755164.1:44495016-44495035
TCTCACAGCCTTACCTGATATACGGAAGTC44495016GAAGACAGCGATGGAAGTGGCTCATACGCACAACGACTTCCTGCCTGATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCACTTCCATCGCTGTCTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCACTTCCATCGCTGTCTTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.133 | 0.124 | search_plus_done; http://172.18.8.135:50400/match?q=CCACTTCCATCGCTGTCTTC&k=0&no_gap=0&offset=0&limit=50
0.163 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGACAGCGATGGAAGTGG&k=0&no_gap=0&offset=0&limit=43
0.164 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).