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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-11 19:11:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Cyclamen persicum EST, clone 12T7.C12.
AJ886522.1:12-31
TGAACAATTTT12CCAGAAGGAATGGCTGTGTTTCTCGGATCTCTCAAGGGTCTTCGAGTAGG
020801AVBC009933HT (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC009933, mRNA sequence.
CN946742.1:508-527
ACAGCAATAGGCATAAGTTTACACAATTTT508CCAGAAGGAATGGCTGTGTTTCTTGGATCAATGAAGGGCCTTCGTGTTGG
Mdfrt3091k20.y1 Mdfrt Malus domestica cDNA clone Mdfrt3091k20 5' similar to SW:YGIE_ECOLI P24198 HYPOTHETICAL 26.5 KD PROTEIN IN TOLC-RIBB INTERGENIC REGION, mRNA sequence.
CV129099.1:270-289
ACAGCAATAGGCATAAGTTTACACAATTTT270CCAGAAGGAATGGCTGTGTTTCTTGGATCAATGAAGGGCCTTCGTGTTGG
Mdfrt3087o15.y1 Mdfrt Malus domestica cDNA clone Mdfrt3087o15 5' similar to SW:YGIE_ECOLI P24198 HYPOTHETICAL 26.5 KD PROTEIN IN TOLC-RIBB INTERGENIC REGION, mRNA sequence.
CV129975.1:259-278
ACAGCAATAGGCATAAGTTTACACAATTTT259CCAGAAGGAATGGCTGTGTTTCTTGGATCAATGAAGGGCCTTCCTGTTGG
Mdfrt3095h23.y2 Mdfrt Malus domestica cDNA clone Mdfrt3095h23 5' similar to SW:YGIE_ECOLI P24198 HYPOTHETICAL 26.5 KD PROTEIN IN TOLC-RIBB INTERGENIC REGION, mRNA sequence.
CV466183.1:270-289
ACAGCAATAGGCATAAGTTTACACAATTTT270CCAGAAGGAATGGCTGTGTTTCTTGGATCAATGAAGGGCCTTCGTGTTGG
Rhododendron vialii isolate Sample 1 chromosome 13a.
CP127077.1:32810334-32810353
TGCATTGCAGGCATAAGCTTGCACATTTTT32810334CCAGAAGGAATGGCTGTGTTTCTTGGATCTATGAGGGTACCTCCAGTATT
Antiaris toxicaria isolate JCLG002 chromosome 1.
CP141153.1:2099554-2099573
TGAATCGTAGGCATAAGCTTGCATAATTTT2099554CCAGAAGGAATGGCTGTGTTCCTAGGATCTATCAAGGTAAGATCAGCATT
Antiaris toxicaria isolate JCLG002 chromosome 1.
CP141166.1:2106497-2106516
TGAATCGTAGGCATAAGCTTGCATAATTTT2106497CCAGAAGGAATGGCTGTGTTCCTAGGATCTATCAAGGTAAGATCAGCATT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2411963-2411982
TGAAATGCAGGCATAAGTTTACACAATTTT2411963CCAGAAGGAATGGCTGTGTTTCTTGGATCAATGAAGGTAACTCAAGCTTA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2478326-2478345
TGAAATGCAGGCATAAGTTTACACAATTTT2478326CCAGAAGGAATGGCTGTGTTTCTTGGATCAATGAAGGTAACTCAAGCTTA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2567398-2567417
TGAAATGCAGGCATAAGTTTACACAATTTT2567398CCAGAAGGAATGGCTGTGTTTCTTGGATCAATGAAGGTAACTCAAGCTTA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2559612-2559631
TGAAATGCAGGCATAAGTTTACACAATTTT2559612CCAGAAGGAATGGCTGTGTTTCTTGGATCAATGAAGGTAACTCAAGCTTA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2610983-2611002
TGAAATGCAGGCATAAGTTTACACAATTTT2610983CCAGAAGGAATGGCTGTGTTTCTTGGATCAATGAAGGTAACTCAAGCTTA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2650928-2650947
TGAAATGCAGGCATAAGTTTACACAATTTT2650928CCAGAAGGAATGGCTGTGTTTCTTGGATCAATGAAGGTAACTCAAGCTTA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2631393-2631412
TGAAATGCAGGCATAAGTTTACACAATTTT2631393CCAGAAGGAATGGCTGTGTTTCTTGGATCAATGAAGGTAACTCAAGCTTA
Biomphalaria glabrata genome assembly, chromosome: 6.
OX365778.1:901609-901628
GAGGGGCGATTCCTCGGTTCATATGATCAT901609CCAGAAGGAATGGCTGTGTTCTAGCGCTTTCGAGAAGGCCTTCGACCACC
Maratus michaelseni genome assembly, chromosome: X1.
OZ007586.1:469070909-469070928
AATTTGACAGGACATTTGTAAATTTCTTTA469070909CCAGAAGGAATGGCTGTGTTAACGGAGTTTTTGAAACACAATTTTTGTAT
TSA: Panax ginseng strain Shi Zhu Shen contig01515.Pagi mRNA sequence.
JI149829.1:732-751
CCAACCCGAAGACCCTTGATTGATCCAAGG732AACACAGCCATTCCTTCTGGAAAATTATGCAAGCTTATCCCTATTGCAGT
Rhododendron vialii isolate Sample 1 chromosome 13b.
CP127064.1:32811302-32811321
AATACTGGAGGTACCTTCATAGATCCAAGA32811302AACACAGCCATTCCTTCTGGAAAATTGTGCAAGCTTATGCCTGCAATGCA
Rhododendron vialii isolate Sample 1 chromosome 13a.
CP127077.1:32843551-32843570
AATACTGGAGGTACCTTCATAGATCCAAGA32843551AACACAGCCATTCCTTCTGGAAAATTGTGCAAGCTTATGCCTGCAATGCA
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:38513021-38513040
TAAGCTTAAGTTACCTTCATTGATCCAAGA38513021AACACAGCCATTCCTTCTGGAAAATTGTGTAAACTTATGCCTGCAATTCA
Drepana falcataria genome assembly, chromosome: 13.
OX243934.1:5796898-5796917
ACATAAGATGAATTACTCTTTTTCTCTGCC5796898AACACAGCCATTCCTTCTGGAGTTCTATTAGGCTTGTTCATAAGACACTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAGAAGGAATGGCTGTGTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAGAAGGAATGGCTGTGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.481 | 0.472 | search_plus_done; http://172.18.8.135:50400/match?q=CCAGAAGGAATGGCTGTGTT&k=0&no_gap=0&offset=0&limit=50
0.598 | 0.117 | search_minus_done; http://172.18.8.135:50400/match?q=AACACAGCCATTCCTTCTGG&k=0&no_gap=0&offset=0&limit=33
0.601 | 0.003 | cgi_end;

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