GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:59:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Peromyscus eremicus genome assembly, chromosome: 1.
OX460394.1:171112426-171112445
CTACACATAAGTCTTGACAGGTTGAAAGTA171112426CCAGAGAAAAATGTGGGGAAAACACTTGAAGATAAGTAGATAGGCAAAGC
Hyperoodon ampullatus genome assembly, chromosome: 11.
OX457066.1:80284728-80284747
GTATTTTGAATGGCAGAACACCATCTGTCT80284728CCAGAGAAAAATGTGGGGAAATTTATTAGGTTAAATAGCAGATCAATAGG
Lagenorhynchus albirostris genome assembly, chromosome: 11.
OX459083.1:82080250-82080269
GTATTTTGAATGGCAGAACGCCATCTGTCT82080250CCAGAGAAAAATGTGGGGAAATTTATGCGATTAAATAGCAGATCAATAGG
Balaenoptera acutorostrata genome assembly, chromosome: 11.
OX465361.1:84061361-84061380
GGATTTTGAATGGTAGAACACCATCTGTCT84061361CCAGAGAAAAATGTGGGGAAATTTATTAGATTAAATAGCAAATCAATAGG
Stenella coeruleoalba genome assembly, chromosome: 11.
OX596396.1:79778126-79778145
GTATTTTGAATGGCAGAACACCATCTGTCT79778126CCAGAGAAAAATGTGGGGAAATTTATGAGATTAAATAGCAGATCAAAAGG
Globicephala melas genome assembly, chromosome: 10.
OY734049.1:80370389-80370408
ATATTTTGAATGGCAGAACACCATCTGTCT80370389CCAGAGAAAAATGTGGGGAAATTTATGAGATTAAATAGCAGATCAAAAGG
Phocoena phocoena genome assembly, chromosome: 11.
OZ004768.1:80138290-80138309
GTATTTTGAATGGCAGAACACCATCTGTCT80138290CCAGAGAAAAATGTGGGGAAATTTATTAGATTAAATAGCAGATCAATAGG
Arachis hypogaea cultivar Shitouqi chromosome A05.
CP030987.1:13255009-13255028
ATCGAAGGAGTGTGCCTTTCCACCTTGCAA13255009CCAGAGAAAAATGTGGGGAAAACAATACGAAAGAGAGTACATTTCCACCT
Arachis hypogaea cultivar Shitouqi chromosome B01.
CP030993.1:131562794-131562813
ATCGAAAGAGTGTGCCTTTCTACCTTGCAA131562794CCAGAGAAAAATGTGGGGAAAACAATACGAAGGAGAGTGCCTTTCCACCT
Arachis ipaensis cultivar K30076 chromosome 01.
CP049892.1:131570604-131570623
ATCGAAAGAGTGTGCCTTTCTACCTTGCAA131570604CCAGAGAAAAATGTGGGGAAAACAATACGAAGGAGAGTGCCTTTCCACCT
Triticum timopheevii genome assembly, chromosome: 5G.
OY997270.1:539926625-539926644
GTTCGGACGTGTTTAAATTGGCCACCCAAA539926625CCAGAGAAAAATGTGGGGAAGATTTGCGCGAGTTTGGACCTCTGTTACGT
Cryptocephalus moraei genome assembly, chromosome: 12.
OX276464.1:13959673-13959692
TAGAGAGAGGGAGAGAGACGTGTATGGAAG13959673CCAGAGAAAAATGTGGGGAATGCCAAGAAGAAATACGCTTAAAGTCAAAG
Cryptocephalus moraei genome assembly, chromosome: 12.
OX276464.1:23263532-23263551
TAATAGAAATAGGGAAGACATGTATGGAAG23263532CCAGAGAAAAATGTGGGGAATGCTAAGAAGAAACAAGCTTGAAGTCAAAG
Peromyscus eremicus genome assembly, chromosome: 1.
OX460466.1:174627604-174627623
GCTTTGCCTATCTACTTATCTTCAAGTGTT174627604TTCCCCACATTTTTCTCTGGTACTTTTAACCTGTCAAGACTTATGTGTAG
Orcinus orca genome assembly, chromosome: 11.
OW443371.1:22452449-22452468
CCTTTTGATCTGCTATTTAATCTCATAAAT22452449TTCCCCACATTTTTCTCTGGAGACAGATGGTGTTCTGCCATTCAAAATAC
Delphinus delphis genome assembly, chromosome: 11.
OX465337.1:22736539-22736558
CCTATTGATCTGCTATTTAATCTCATAAAT22736539TTCCCCACATTTTTCTCTGGAGACAAATGGTGTTCTGCCATTCAAAATAC
AdH1150-CPY2-B12TF AdH1 Arachis duranensis genomic clone AdH1150-CPY2-B12, genomic survey sequence.
FI292988.1:718-737
AGGTGGAAATGTACTCTCTTTCGTATTGTT718TTCCCCACATTTTTCTCTGGTTGCAAGGTGGAAAGGCACACTCCTTCGAT
AdH1182-CPY2-K11TF AdH1 Arachis duranensis genomic clone AdH1182-CPY2-K11, genomic survey sequence.
FI315586.1:712-731
AGGTGGAAATGTACTCTCTTTCGTATTGTT712TTCCCCACATTTTTCTCTGGTTGCAAGTGGAAAGGCACACTCCTTCGATG
Arachis hypogaea cultivar Shitouqi chromosome A03.
CP030985.1:109654019-109654038
TGGAAAGACACTCTCCTTTGTATTATTTTT109654019TTCCCCACATTTTTCTCTGGTTGCAAGGTGGAAAGGCACACTCCTTCGAT
Arachis hypogaea cultivar Shitouqi chromosome A04.
CP030986.1:29631412-29631431
AGGTGGACAGATACTCTCCTTCGTATTGTT29631412TTCCCCACATTTTTCTCTGGTTGCAAGGTGGAAAAGCACACTCCTTCAAT
Arachis hypogaea cultivar Shitouqi chromosome A05.
CP030987.1:21021261-21021280
AAGGTGGAAAGGCACTCTCTTTCGTATTGT21021261TTCCCCACATTTTTCTCTGGTTGCAAGGTGGAAAGGCATGCTCTTTCGAT
Urbanus simplicius genome assembly, chromosome: 3.
OX453059.1:8903126-8903145
TATTGTTATGATAATAGAAAAAACATCATT8903126TTCCCCACATTTTTCTCTGGTCGCAGGCGCCATATTAAAAAAGTAGAAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAGAGAAAAATGTGGGGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAGAGAAAAATGTGGGGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.157 | 0.148 | search_plus_done; http://172.18.8.135:50400/match?q=CCAGAGAAAAATGTGGGGAA&k=0&no_gap=0&offset=0&limit=50
0.293 | 0.136 | search_minus_done; http://172.18.8.135:50400/match?q=TTCCCCACATTTTTCTCTGG&k=0&no_gap=0&offset=0&limit=37
0.299 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).