GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:35:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BR040494 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-010A03 5', mRNA sequence.
EX055850.1:28-48
ATAATTGTACCTCCCTAGTTGCTATAA28CCAGAGCTGAGCTACTTCTAATGTCCTTTCTTTAACAAGATGCTTTTGTCT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:30012759-30012779
AAATTAATTGTACCTCCCTAGTTGCTATAA30012759CCAGAGCTGAGCTACTTCTAATGTCTTTTCTTTAACAAGATGCTTTTGTCT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:30037707-30037727
AAATTAATTGTACCTCCCTAGTTGCTATAA30037707CCAGAGCTGAGCTACTTCTAATGTCTTTTCTTTAACAAGATGCTTTTGTCT
Brassica napus genome assembly, chromosome: C07.
HG994371.1:53353736-53353756
AAATTAATTGTACCTCCCTAGTTGCTATAA53353736CCAGAGCTGAGCTACTTCTAATGTCTTTTTAACAGAGATGCTTGCGGTCTT
Brassica rapa genome, scaffold: A03.
LR031572.1:29828254-29828274
AAATTAATTGTACCTCCCTAGTTGCTATAA29828254CCAGAGCTGAGCTACTTCTAATGTCTTTTCTTTAACAAGATGCTTTTGTCT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:29889618-29889638
AAATTAATTGTACCTCCCTAGTTGCTATAA29889618CCAGAGCTGAGCTACTTCTAATGTCTTTTCTTTAACAAGATGCTTTTGTCT
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:2297445-2297465
AAGACCGCAAGCATCTCTGTTAAAAAGACA2297445TTAGAAGTAGCTCAGCTCTGGTTATAGCAACTAGGGAGGTACAATTAATTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCAGAGCTGAGCTACTTCTAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAGAGCTGAGCTACTTCTAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.180 | 0.172 | search_plus_done; http://172.18.8.135:50400/match?q=CCAGAGCTGAGCTACTTCTAA&k=0&no_gap=0&offset=0&limit=50
0.212 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=TTAGAAGTAGCTCAGCTCTGG&k=0&no_gap=0&offset=0&limit=44
0.213 | 0.001 | cgi_end;

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