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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 21:09:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 3878 from patent US 10766935.
MV647273.1:1812-1832
ACATGCATTCTATAAACCTTCACTTCTAGG1812CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT
Sequence 3890 from patent US 10766935.
MV647285.1:1777-1797
ACATGCATTCTATAAACCTTCACTTCTAGG1777CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT
Sequence 3891 from patent US 10766935.
MV647286.1:1880-1900
ACATGCATTCTATAAACCTTCACTTCTAGG1880CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT
Sequence 3878 from patent US 11566053.
OS270752.1:1812-1832
ACATGCATTCTATAAACCTTCACTTCTAGG1812CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT
Sequence 3890 from patent US 11566053.
OS270764.1:1777-1797
ACATGCATTCTATAAACCTTCACTTCTAGG1777CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT
Sequence 3891 from patent US 11566053.
OS270765.1:1880-1900
ACATGCATTCTATAAACCTTCACTTCTAGG1880CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT
GA__Eb0013E18f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0013E18f, mRNA sequence.
BF271950.1:663-683
ACATGCATTCTATANACCTTCACTTCTAGG663CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGGACT
GA__Ed0036E01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0036E01f, mRNA sequence.
BQ411062.1:310-330
ACATGCATTCTATAAACCTTCACTTCTAGG310CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT
CM058G08 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR457774.1:410-430
ACATGCATTCTATAAACCTTCACTTCTAGG410CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT
EST1070003 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT559363.1:865-885
ACATGCATTCTATAAACCTTCACTTCTAGG865CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT
EST690 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 10-a2 5', mRNA sequence.
EE593088.1:603-623
ACATGCATTCTATAAACCTTCACTTCTAGG603CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT
UFL_328_06 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES819969.1:733-753
ACATGCATTCTATAAACCTTCACTTCTAGG733CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT
UFL_338_23 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES832686.1:730-750
ACATGCATTCTATAAACCTTCACTTCTAGG730CCAGCCTTGACAAGTTTGATGCATACAAGATTTCAAGTTTAAAGGGAACTA
UFL_104_83 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES843886.1:437-457
ACATGCATTCTATAAACCTTCACTTCTAGG437CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT
Gossypioides kirkii chromosome KI_09.
CP032251.1:29393589-29393609
ACATGCATTCTATAAACCTTCACTTCTAGG29393589CCAGCCTTGACAAGTTTGATGCATACCCAGATTTCAAGTTTAAAGGGAACT
Gossypium raimondii isolate D5-4 chromosome D5_09.
CP032561.1:31750628-31750648
ACATGCATTCTATAAACCTTCACTTCTAGG31750628CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT
Gossypium bickii isolate GPG1lz chromosome 9.
CP106720.1:79293961-79293981
ACATGCATTCTATAAACCTTCACTTCTAGG79293961CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT
Gossypium rotundifolium isolate GPK201 chromosome 9.
CP106730.1:113829726-113829746
ACATGCATTTTATAAACCTTCACTTCTAGG113829726CCAGCCTTGACAAGTTTGATGCATACCAAGATTTCAAGTTTAAAGGGAACT
GA__Ed0035F10r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0035F10r, mRNA sequence.
BQ410962.1:246-266
AGTTCCCTTTAAACTTGAAATCTTGGTATG246CATCAAACTTGTCAAGGCTGGCCTAGAAGTGAAGGTTTATAGAATGCATGT
GA__Ed0036E01r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0036E01r, mRNA sequence.
BQ411063.1:246-266
AGTTCCCTTTAAACTTGAAATCTTGGTATG246CATCAAACTTGTCAAGGCTGGCCTACAAGTGAAGGTTTATAGAATGCATGT
GR__Eb0047I08.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0047I08 5', mRNA sequence.
CO111451.1:250-270
AGTTCCCTTTAAACTTGAAATCTTGGTATG250CATCAAACTTGTCAAGGCTGGCCTAAAAGTGAAGGTTTATAGAATGCATGT
h2_E12.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO103918.1:168-188
AGTTCCCTTTAAACTTGAAATCTTGGTATG168CATCAAACTTGTCAAGGCTGGCCTAGAAGTGAAGGTTTATAGAATGCATGT
H06_420284.90.S1104072089.anther-SP4506 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK703780.1:166-186
AGTTCCCTTTAAACTTGAAATCTTGGTATG166CATCAAACTTGTCAAGGCTGGCCTAGAAGTGAAGGTTTATAGAATGCATGT
H10_425241.94.S1104112093.anther-SP8734 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK704210.1:234-254
AGTTCCCTTTAAACTTGAAATCTTGGTATG234CATCAAACTTGTCAAGGCTGGCCTAGAAGTGAAGGTTTATAGAATGCATGT
Gossypium turneri isolate D10-2 chromosome D10_09.
CP032579.1:11714773-11714793
AGTTCCCTTTAAACTTGAAATCTTGGTATG11714773CATCAAACTTGTCAAGGCTGGCCTAGAAGTGAAGGTTTATAGAATGCATGT
Cenchrus americanus genome assembly, chromosome: Pg4.
OZ001408.1:74733771-74733791
AAATAGCCGCCTGCCTTGATTGGATGGATG74733771CATCAAACTTGTCAAGGCTGGACGGACCTACAAACTTCGGAACACGGCAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAGCCTTGACAAGTTTGATG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAGCCTTGACAAGTTTGATG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.984 | 0.976 | search_plus_done; http://172.18.8.135:50400/match?q=CCAGCCTTGACAAGTTTGATG&k=0&no_gap=0&offset=0&limit=50
1.561 | 0.577 | search_minus_done; http://172.18.8.135:50400/match?q=CATCAAACTTGTCAAGGCTGG&k=0&no_gap=0&offset=0&limit=32
1.567 | 0.005 | cgi_end;

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