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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 15:06:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Canis lupus familiaris breed Labrador retriever chromosome 13a.
CP050604.1:32665332-32665350
TGGAGGTGGACACAACACAGTCCCCACCCT32665332CCAGGAGCTCACAGATTGGCAGCGGGGACTGAAGTCCTGGTAATTTCAG
Canis lupus familiaris breed Labrador retriever chromosome 13b.
CP050644.1:32671560-32671578
TGGAGGTGGACACAACACAGTCCCCACCCT32671560CCAGGAGCTCACAGATTGGCAGCGGGGACTGAAGTCCTGGTAATTTCAG
Pipistrellus pipistrellus genome assembly, chromosome: 4.
LR862360.1:31401413-31401431
AATCGAGCGAGCTACCTTCTCAGCCCTCTT31401413CCAGGAGCTCACAGATTGGGGGCTGGTGGCTCCTGAGTGTCCCTACCCT
Pipistrellus pygmaeus genome assembly, chromosome: 4.
OX465305.1:36603393-36603411
AATCGAGCGAGCTACCTTCTCAGCCCTCTT36603393CCAGGAGCTCACAGATTGGGGGCTGGTGGCTCCTGAGTATCCCTGTTCT
G01-071G1 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK798730.1:313-331
AAGAAGAAAGGAAGCCACCTCAGATAAATC313CCAGGAGCTCACAGATTGGGGTTAAGATCGTGGCTGGTTTGGCTTCAGC
G08-G08-003 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK799273.1:317-335
AAGAAGAAAGGAAGCCACCTCAGATAAATC317CCAGGAGCTCACAGATTGGGGTTAAGATCGTGGCTGGTTTGGCTTCAGC
F10-F10-002 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK799764.1:301-319
AAGAAGAAAGGAAGCCACCTCAGATAAATC301CCAGGAGCTCACAGATTGGGGTTAAGATCGTGGCTGGATTGGCTTCAGC
Gossypium turneri isolate D10-2 chromosome D10_08.
CP032578.1:53577435-53577453
AAGAAGAAAGGAAGCCACCTCAGATAAATC53577435CCAGGAGCTCACAGATTGGGGTTAAGATCGTGGCTGGTTTGGCTTCAGC
Gossypium herbaceum isolate GPA1alz chromosome 8.
CP106698.1:117348639-117348657
AAGAAGAAAGGAAGCCACCTCAGATAAATC117348639CCAGGAGCTCACAGATTGGGGTTAAGATCGTGGCTGGTTTGGCTTCAGC
Gossypium rotundifolium isolate GPK201 chromosome 8.
CP106729.1:180359719-180359737
AAGAAGAAAGGAAGCCACCTCAGATAAATC180359719CCAGGAGCTCACAGATTGGGGTTAAGATCGTGGCTGGTTTGGCTTCAGC
Meconema thalassinum genome assembly, chromosome: 1_1.
OX336388.2:1331703260-1331703278
CTTTCCCATGTTACATTCTATTAGTAACAG1331703260CCAGGAGCTCACAGATTGGTTGGCGATCATGGGACCCCCAGCTGAGTCT
Chionomys nivalis genome assembly, chromosome: 9.
OX465457.1:55796888-55796906
GACAGGAACTCACCAGTTAGGCTACACTGG55796888CCAATCTGTGAGCTCCTGGGCTCCTCCTGTCTTCCTCCTCCCAGCACTG
Canis lupus genome assembly, chromosome: 13.
HG994397.1:33662962-33662980
CTGAAATTACCAGGACTTCAGTCCCCGCTG33662962CCAATCTGTGAGCTCCTGGAGGGTGGGGACTGTGTTGTGTCCACCTCCA
Meles meles genome assembly, chromosome: 1.
OV277441.1:116680744-116680762
CACCTGTCGTGGCTCGGTATCAGGTTCCCC116680744CCAATCTGTGAGCTCCTGGGGACAGCACGGCCATGTTCATCCATCTGCG
Betta splendens genome assembly, chromosome: 22.
LR132012.3:9644595-9644613
CGCGGAGCGGGGGTAATTACCAGCCGGAGC9644595CCAATCTGTGAGCTCCTGGAGCGAGGCCACGGAGGTTCCTGCAGCCGGA
Syngnathus acus genome assembly, chromosome: 22.
LR594606.1:9192535-9192553
TAGCTGCTTTTGAAGCCTGCTGCTCTAAGC9192535CCAATCTGTGAGCTCCTGGAAACCCAAGGGGAACATTATCGAATTAAAC
Syngnathus acus genome assembly, chromosome: 22.
OX411235.1:10038720-10038738
TAGCTGCTTTTGAAGCCTGCTGCTCTAAGC10038720CCAATCTGTGAGCTCCTGGAAACCCAAGGGGAACATTATCGAATTAAAC
GA__Ed0027A06r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0027A06r, mRNA sequence.
BQ410007.1:275-293
GCTGAAGCCAAACCAGCCACGATCTTAACC275CCAATCTGTGAGCTCCTGGGATTTATCTGAGGGGGCTTCCTTTGTTCTT
GR__Ea45O14.f GR__Ea Gossypium raimondii cDNA clone GR__Ea45O14 5', mRNA sequence.
CO081684.1:162-180
GCTGAAGCCAAACCAGCCACGATCTTAACC162CCAATCTGTGAGCTCCTGGGATTTATCTGAGGGGGCTTCCTTTCTTCTT
GR__Eb11C11.r GR__Eb Gossypium raimondii cDNA clone GR__Eb11C11 3', mRNA sequence.
CO126876.1:269-287
GCTGAAGCCAAACCAGCCACGATCTTAACC269CCAATCTGTGAGCTCCTGGGATTTATCTGAGGGGGCTTCCTTTCTTCTT
GH_HYPT_01-01-04R_F04_InvR_13Apr04_022_R Stem - 3 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW225140.1:222-240
GCTGAAGCCAAACCAGCCACGATCTTAACC222CCAATCTGTGAGCTCCTGGGATTTATCTGAGGTGGCTTCCTTTCTTCTT
Ictidomys tridecemlineatus clone VMRC20-231N7, WORKING DRAFT SEQUENCE, 11 ordered pieces.
AC198568.3:125336-125354
TTATCCACAGGGGTGGTTCCTTCTCTGCCT125336CCAATCTGTGAGCTCCTGGGGGCAGGGGATCCCTCTTATTCACCACTGC
Gossypium raimondii isolate D5-4 chromosome D5_08.
CP032560.1:8579755-8579773
GCTGAAGCCAAACCAGCCACGATCTTAACC8579755CCAATCTGTGAGCTCCTGGGATTTATCTGAGGTGGCTTCCTTTCTTCTT
Gossypium herbaceum isolate Zhongcao1 chromosome 8.
CP106683.1:11961138-11961156
GCTGAAGCCAAACCAGCCACGATCTTAACC11961138CCAATCTGTGAGCTCCTGGGATTTATCTGAGGTGGCTTCCTTTCTTCTT
Gossypium bickii isolate GPG1lz chromosome 8.
CP106712.1:12894710-12894728
GCTGAAGCCAAGCCAGCCACGATCTTAACC12894710CCAATCTGTGAGCTCCTGGGATTTATCTGAGGTGGCTTCCTTTCTTCTT
Ricordea florida genome assembly, chromosome: 1.
OX453272.1:15250868-15250886
ATTTACCTCTAATATGCAAGGATGCTTTTT15250868CCAATCTGTGAGCTCCTGGTCAGTCATCCACCTTAAGTTGTGAATAGGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCAGGAGCTCACAGATTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAGGAGCTCACAGATTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.375 | 0.366 | search_plus_done; http://172.18.8.135:50400/match?q=CCAGGAGCTCACAGATTGG&k=0&no_gap=0&offset=0&limit=50
0.540 | 0.166 | search_minus_done; http://172.18.8.135:50400/match?q=CCAATCTGTGAGCTCCTGG&k=0&no_gap=0&offset=0&limit=39
0.550 | 0.010 | cgi_end;

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