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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-06 04:12:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Gossypium turneri isolate D10-2 chromosome D10_09.
CP032579.1:14655428-14655447
ACTTGTGGCTCTGCCCGAGAAGAAGATGGC14655428CCAGGCAAAGAAGAAGATCGGTTTGGATTTGAAGAAGAGCTGCCAGTGGA
Gossypium herbaceum isolate Zhongcao1 chromosome 9.
CP106695.1:7206058-7206077
ACTTGTGGCTCTGCCCGAGAAGGAGATGGC7206058CCAGGCAAAGAAGAAGATCGGCTTGGATTTGAAGAAGAGCTGCCAGTGGA
Spilarctia lutea genome assembly, chromosome: 23.
OU696493.1:2186140-2186159
AGGGCCGACCCCAAATAAAAAAGGAAAAGG2186140CCAGGCAAAGAAGAAGATCGAACAGTGTAGAAGCTTCAGAACTTCCTTCT
Euclidia mi genome assembly, chromosome: 20.
OX123201.2:36943789-36943808
AGGGCTGACCCCAAATAAAATGGGAAAAGG36943789CCAGGCAAAGAAGAAGATCGCTTCATCCATAGATCTGCTGGAAAATTCTT
Trisateles emortualis genome assembly, chromosome: 17.
OX352746.1:14350149-14350168
AGTGCCGACCCCAAGTAAAATGGGAAAGGG14350149CCAGGCAAAGAAGAAGATCGTGAGGTCCTGGGTTCGATTCTAAGTGAGTG
Conger conger genome assembly, chromosome: 10.
OY741323.1:21631963-21631982
AATATGAATGCCAGTGCAGAAGAACCTCAT21631963CGATCTTCTTCTTTGCCTGGTTTGAACTTGCAAGGACATGGAGATCTAGC
Sequence 2 from patent US 11396665.
OO402380.1:30652139-30652158
CCGCTACCAAGGACAAACCAAACCCAAGGC30652139CGATCTTCTTCTTTGCCTGGGGGTTGGTCTTATCCGGAGCGGGTACCAAA
AF123245 Gossypium hirsutum 24 days postanthesis secondary-stage fibers Gossypium hirsutum cDNA clone CF16S, mRNA sequence.
AF123245.1:443-462
TCCACTGGCAGCTCTTCTTCAAATCCAAGC443CGATCTTCTTCTTTGCCTGGGCCATCTTCTTCTCGGGCAGAACCACAAGT
GA__Ed0070H07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0070H07f, mRNA sequence.
BQ404454.1:428-447
TCCACTGGCAGCTCTTCTTCAAATCCAAGC428CGATCTTCTTCTTTGCCTGGGCCATCTTCTTCTCGGGCAGACCCACAAGT
GR__Eb10H09.f GR__Eb Gossypium raimondii cDNA clone GR__Eb10H09 5', mRNA sequence.
CO126433.1:354-373
TCCACTGGCAGCTCTTCTTCAAATCCAAGC354CGATCTTCTTCTTTGCCTGGGCCATCTTCTTCTCGGGCAGAGCCACAAGT
GH_CHX14J11.r GH_CHX Gossypium hirsutum cDNA clone GH_CHX14J11 3', mRNA sequence.
DT463940.1:521-540
TCCACTGGCAGCTCTTCTTCAAATCCAAGC521CGATCTTCTTCTTTGCCTGGGCCATCTTCTTCTCGGGCAGAGCCACAAGT
UFL_492_75 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES791291.1:490-509
TCCACTGGCAGCTCTTCTTCAAATCCAAGC490CGATCTTCTTCTTTGCCTGGGCCATCTTCTTCTCGGGCAGAGCCACAAGT
UFL_219_60 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES815535.1:173-192
TCCACTGGCAGCTCTTCTTCAAATCCAAGC173CGATCTTCTTCTTTGCCTGGGCCATCTTCTTCTCGGGCAGAGCCACAAGT
EST000724 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 03-L08 5', mRNA sequence.
GR707524.1:565-584
TCCACTGGCAGCTCTTCTTCAAATCCAAGC565CGATCTTCTTCTTTGCCTGGGCCATCTTCTTCTCGGGCAGAGCCACAAGT
mhczaa0_011347.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_011347.z1, mRNA sequence.
JG838322.1:696-715
CCAACTGGCAGCTCTTCTTCAAATCCAAGC696CGATCTTCTTCTTTGCCTGGGCCATCTTCTTCTCGGGCAGACCC
ndcxa0_0023_B10.ab1 Upland cotton seedling roots at 48h control (ndcxa) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ370138.1:57-76
TCCACTGGCAGCTCTTCTTCAAATCCAAGC57CGATCTTCTTCTTTGCCTGGGCCATCTTCTTCTCGGGCAGAGCCACAAGT
ndcxd0_0015_E10.ab1 Upland cotton seedling roots at salt stress 48h (ndcxd) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ378000.1:118-137
TCCACTGGCAGCTCTTCTTCAAATCCAAGC118CGATCTTCTTCTTTGCCTGGGCCATCTTCTTCTCGGGCAGAGCCACAAGT
Penicillium chrysogenum Wisconsin 54-1255 complete genome, contig Pc00c20.
AM920435.1:2158475-2158494
CCGCTACCAAGGACAAACCAAACCCAAGGC2158475CGATCTTCTTCTTTGCCTGGGGGTTGGTCTTATCCGGAGCGGGTACCAAA
Gossypium raimondii isolate D5-4 chromosome D5_09.
CP032561.1:28740893-28740912
TCCACTGGCAGCTCTTCTTCAAATCCAAGC28740893CGATCTTCTTCTTTGCCTGGGCCATCTTCTTCTCGGGCAGAGCCACAAGT
Gossypium herbaceum isolate GPA1alz chromosome 9.
CP106708.1:65907319-65907338
TCCACTGGCAGCTCTTCTTCAAATCCAAGC65907319CGATCTTCTTCTTTGCCTGGGCCATCTTCTTCTCGGGCAGAGCCACAAGT
Gossypium bickii isolate GPG1lz chromosome 9.
CP106720.1:73768437-73768456
TCCACTGGCAGCTCTTCTTCAAATCCAAGC73768437CGATCTTCTTCTTTGCCTGGGCCATCTTCTTCTCGGGCAGAGCCACAAGT
Gossypium rotundifolium isolate GPK201 chromosome 9.
CP106730.1:106851573-106851592
TCCACTGGCAGCTCTTCTTCAAATCCAAGC106851573CGATCTTCTTCTTTGCCTGGGCCATCTTCTTCTCGGGCAGAGCCACAAGT
Chitinophaga filiformis strain YT5 chromosome, complete genome.
CP095855.1:5117533-5117552
GGCCCGCATACATCCAGCGGAATTGCATGG5117533CGATCTTCTTCTTTGCCTGGTAATATTCCAGCCGGATATTATATACTTCA
Agrobacterium tumefaciens strain CFBP5506 chromosome Linear, complete sequence.
CP122963.1:258529-258548
GCGGTGCAGGGCATTACTTCATTGCGATCG258529CGATCTTCTTCTTTGCCTGGACTTCGGTGCTCGGCAACTATTCCTATGCC
Herminia tarsipennalis genome assembly, chromosome: 11.
OX243841.2:14615581-14615600
CATTCATAAAAAATACTAAAACATATTTTA14615581CGATCTTCTTCTTTGCCTGGCCTTCCTATTTTGTTTGAGGCCGGCCCTCC
Ostrinia nubilalis genome assembly, chromosome: 6.
OY979740.1:14865309-14865328
TGCACCACCGAACTTTGACTGTAACTATAA14865309CGATCTTCTTCTTTGCCTGGCCCATTCCCATTTTATTTGGGGTCGGCCCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAGGCAAAGAAGAAGATCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAGGCAAAGAAGAAGATCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.367 | 0.358 | search_plus_done; http://172.18.8.135:50400/match?q=CCAGGCAAAGAAGAAGATCG&k=0&no_gap=0&offset=0&limit=50
1.275 | 0.908 | search_minus_done; http://172.18.8.135:50400/match?q=CGATCTTCTTCTTTGCCTGG&k=0&no_gap=0&offset=0&limit=45
1.288 | 0.013 | cgi_end;

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