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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:12:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2550036-2550055
AGAATTGTCCATTGGATTTTTCTAATGATA2550036CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2624724-2624743
AGAATTGTCCATTGGATTTTTCTAATGATA2624724CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2704426-2704445
AGAATTGTCCATTGGATTTTTCTAATGATA2704426CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2694998-2695017
AGAATTGTCCATTGGATTTTTCTAATGATA2694998CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2611302-2611321
AGAATTGTCCATTGGATTTTTCTAATGATA2611302CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2719000-2719019
AGAATTGTCCATTGGATTTTTCTAATGATA2719000CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2707259-2707278
AGAATTGTCCATTGGATTTTTCTAATGATA2707259CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2784271-2784290
AGAATTGTCCATTGGATTTTTCTAATGATA2784271CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2824223-2824242
AGAATTGTCCATTGGATTTTTCTAATGATA2824223CCAGTGCGTTGAGTATGGTGTCACATGTTATTGCATTACTTCTTTCTGAG
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2768484-2768503
AGAATTGTCCATTGGATTTTTCTAATGATA2768484CCAGTGCGTTGAGTATGGTGTCACTTGTTATTGCATTACTTCTTTCTGAG
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38505419-38505438
CTCAGAAAGAAGTAATGCAATAACATGTGA38505419CACCATACTCAACGCACTGGTATCATTAGAAAAATCCAATGGACAATTCT
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:38365248-38365267
CTCAGAAAGAAGTAATGCAATAACATGCGA38365248CACCATACTCAACGCACTGGTATCATTAGAAAAATCCAATGGACAATTCT
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:25567263-25567282
CTCAGAAAGAAGTAATGCAATAACATGCGA25567263CACCATACTCAACGCACTGGTATCATTAGAAAAATCCAATGGACAATTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCAGTGCGTTGAGTATGGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAGTGCGTTGAGTATGGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.180 | 0.172 | search_plus_done; http://172.18.8.135:50400/match?q=CCAGTGCGTTGAGTATGGTG&k=0&no_gap=0&offset=0&limit=50
0.283 | 0.103 | search_minus_done; http://172.18.8.135:50400/match?q=CACCATACTCAACGCACTGG&k=0&no_gap=0&offset=0&limit=40
0.285 | 0.002 | cgi_end;

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