GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 04:54:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sus scrofa scrofa breed NS chromosome 15.
CP071566.1:41594594-41594613
TGATGAATTCTACAAAACTGTAAAGAAGTG41594594CCAGTGCTTCCAAAACTCTTCCAAAAAACAGGAGAGGAGGGAACATTTTC
Sus scrofa genome assembly, chromosome: 15.
OY997222.1:55077345-55077364
TGATGAATTCTACAAAACTGTAAAGAAGTG55077345CCAGTGCTTCCAAAACTCTTCCAAAAAACAGGAGAGGAGGGAACATTTTC
Sciaenops ocellatus chromosome 7.
CP136872.1:20626991-20627010
AGGATAAACCTGTGCTAAACCAGTGGTAAG20626991CCAGTGCTTCCAAAACTCTTAACTAGGGAGCGAGTTTTTACCTTGCGCGT
Polytrichum commune genome assembly, chromosome: 1.
OX485803.1:76430072-76430091
ATAGCCTTCTTCCTGCGTGGAGAATGCAAC76430072CCAGTGCTTCCAAAACTCTTGGGAACCTTACCATCGAGCTTCTTCACACT
Lycaena phlaeas genome assembly, chromosome: 21.
HG995184.1:6745051-6745070
TTTTCTTCCATATATTTCGGTTCCTCTAAC6745051CCAGTGCTTCCAAAACTCTTTTGCTTCTTTCAAACCTTTCAAACTTTTCC
Selenia dentaria genome assembly, chromosome: 13.
OU862888.1:2523049-2523068
ATTTTGAATAGAAGTTAAGTAATCTCTTGA2523049CCAGTGCTTCCAAAACTCTTGTTTTAATTTGGAGCATTGATCCCAAAATC
Selenia dentaria genome assembly, chromosome: 15.
OU862890.1:3859666-3859685
ATTTTGAAGAGAAGTTAAGTAATCTCTTGA3859666CCAGTGCTTCCAAAACTCTTGTTTTAATTTGGAACATTGATCCCAAAATC
Selenia dentaria genome assembly, chromosome: 16.
OU862891.1:8101583-8101602
ATTTTGAAGAGAAGTTAAGTAATCTCTTGA8101583CCAGTGCTTCCAAAACTCTTGTTTTAATTTGGAACATTGATCCCAAAATC
Selenia dentaria genome assembly, chromosome: 17.
OU862892.1:28154029-28154048
ATTTTGAAGAGAAGTTAAGTAATCTCTTGA28154029CCAGTGCTTCCAAAACTCTTGTTTTAATTTGGAACATTGATCCCAAAATC
Selenia dentaria genome assembly, chromosome: 19.
OU862894.1:5128426-5128445
ATTTTGAAGAGAAGTTAAGTAAGCTCTTGA5128426CCAGTGCTTCCAAAACTCTTGTTTTAATTTGGAACATTGATCCCAAAATC
Sylvilagus floridanus genome assembly, chromosome: 14.
OX463236.1:36122377-36122396
TGTGTGTGCTTGCCTATGGTGTTTCATTGG36122377AAGAGTTTTGGAAGCACTGGAATCTCTAGCTCATGTTTATCCCAGAAACT
Meleagris gallopavo genome assembly, chromosome: 1.
OW982252.1:80058482-80058501
AGTCCAAGCTGAGTCTGCAAGAAAGCTAAA80058482AAGAGTTTTGGAAGCACTGGAGCTAGAAGATCTTCCTGTCCAATACCATT
Meleagris gallopavo genome assembly, chromosome: 1.
OW982291.1:79925617-79925636
AATCCAAGCTGAGTCTGCAAGAAAGCTAAA79925617AAGAGTTTTGGAAGCACTGGAGCTAGAAGATCTTCCTGTCCAATACCATT
Argyrosomus regius genome assembly, chromosome: 13.
OX336894.1:7668089-7668108
ACTCACAAGGTAAAAACTCGCTCCCTAGTT7668089AAGAGTTTTGGAAGCACTGGCTTACCACTGGTTTAGCACAGGTTTATCCT
TSA: Cannabis sativa PK24718.1_1.CasaPuKu mRNA sequence.
JP450191.1:6195-6214
GGAACTTGCTCTGTCTCAGTTTCTGATACA6195AAGAGTTTTGGAAGCACTGGAATTGATGGGATGACAACAGGTGGAGCTAG
Sus scrofa genomic clone CH242-76D12, genomic survey sequence.
CT174249.1:487-506
GAAAATGTTCCCTCCTCTCCTGTTTTTTGG487AAGAGTTTTGGAAGCACTGGCACTTCTTTACAGTTTTGTAGAATTCATCA
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-153M5.
CU571271.2:131351-131370
GAAAATGTTCCCTCCTCTCCTGTTTTTTGG131351AAGAGTTTTGGAAGCACTGGCACTTCTTTACAGTTTTGTAGAATTCATCA
Selenia dentaria genome assembly, chromosome: 10.
OU862885.1:24191450-24191469
GATTTTGGGATCAATGTTCCAAATTAAAAC24191450AAGAGTTTTGGAAGCACTGGTCAAGAGATTACTTAACTTCTCTTCAAAAT
Selenia dentaria genome assembly, chromosome: 14.
OU862889.1:8132777-8132796
GATTTTGGGATCAATGTTCCAAATTAAAAC8132777AAGAGTTTTGGAAGCACTGGTCAAGAGATTACTTAACTTCTCTTCAAAAT
Selenia dentaria genome assembly, chromosome: 19.
OU862894.1:1434468-1434487
GATTTTGGGATCAATGTTCCAAATTAAAAC1434468AAGAGTTTTGGAAGCACTGGTCAAGAGATTACTTAACTTCTCTTCAAAAT
Selenia dentaria genome assembly, chromosome: 20.
OU862895.1:26357504-26357523
GATTTTGGGATCAATGTTCCAAATTAAAAC26357504AAGAGTTTTGGAAGCACTGGTCAAGAGATTACTTAACTTCTCTTCAAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCAGTGCTTCCAAAACTCTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCAGTGCTTCCAAAACTCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.202 | 0.193 | search_plus_done; http://172.18.8.135:50400/match?q=CCAGTGCTTCCAAAACTCTT&k=0&no_gap=0&offset=0&limit=50
0.349 | 0.147 | search_minus_done; http://172.18.8.135:50400/match?q=AAGAGTTTTGGAAGCACTGG&k=0&no_gap=0&offset=0&limit=40
0.357 | 0.007 | cgi_end;

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