GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:28:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Lymantria monacha genome assembly, chromosome: 3.
LR991084.1:4364666-4364685
ATTTTGGTTAGTGCAGTTTTTCCTATATTG4364666CCATAAAAGTTGACGCTTGCGTCTATAACAAAGCCTTATACCTCTAGTAA
Lymantria monacha genome assembly, chromosome: 5.
LR991086.1:17648294-17648313
TATATCGGTTAGTGCATTTTTTCTATATTG17648294CCATAAAAGTTGACGCTTGCCTCTACAACAAAGCCTAATACCTCTAGTAA
Lymantria monacha genome assembly, chromosome: 9.
LR991090.1:18619375-18619394
ATTTCGGTTAGTGCAGTTTTTTCTATATTG18619375CCATAAAAGTTGACGCTTGCGTCTACAACAAAGCCTAATACCTCTAGTAA
Lymantria monacha genome assembly, chromosome: 11.
LR991092.1:21112783-21112802
ATTTCGGTTAGTGCAGTTTTTTCTATATTG21112783CCATAAAAGTTGACGCTTGCGTCTACAACAAAGCCTAGTACCTCTAGTAA
Lymantria monacha genome assembly, chromosome: 15.
LR991096.1:29801976-29801995
ATTTTGGTTAGTGCAGTTTTTTCTATATTG29801976CCATAAAAGTTGACGCTTGCGTCTACAACAAAGCCTAATACCTCTAGTAA
Lymantria monacha genome assembly, chromosome: 18.
LR991099.1:23693068-23693087
ATTTTGGTTAGTGCAGTTTTTTCTATATTG23693068CCATAAAAGTTGACGCTTGCGTCTACAACAAAGCCTAATACCTCTAGTAA
Lymantria monacha genome assembly, chromosome: 21.
LR991102.1:22426594-22426613
TTGTTAGTGCAGTTTTATTAATCTATAATG22426594CCATAAAAGTTGACGCTTGCGCTCTATAACAAAGCTTAACACCTCTTGTG
Lymantria monacha genome assembly, chromosome: 22.
LR991103.1:8425629-8425648
ATTTTGGTTAGTGCAGTTTTTTCTATATTG8425629CCATAAAAGTTGACGCTTGCGTCTACAACAAAGCCTAATACCTCTAGTAA
Lymantria monacha genome assembly, chromosome: 25.
LR991106.1:6440755-6440774
ATTTTGGTTAGTGCAGTTTTTTCTATATTG6440755CCATAAAAGTTGACGCTTGCGTCTACAACAAACCCTAATACCTCTAGTAA
Lymantria monacha genome assembly, chromosome: 25.
LR991106.1:17296415-17296434
ATTTTGGTTAGTGCAGTTTTTTCTATATTG17296415CCATAAAAGTTGACGCTTGCGTCTACAACAAAGCCTAATACCTCTAGTAA
Euplexia lucipara genome assembly, chromosome: 13.
OV179155.1:2532164-2532183
ATTATTTTCTGTGGGATCTTTTCTGTAATT2532164CCATAAAAGTTGACGCTTGCGTTTACAGCATACTCTAAGACCTTTTGTAA
Euplexia lucipara genome assembly, chromosome: 18.
OV179160.1:6537299-6537318
ATTATTTTCTGTGGGTTTTTTTCTGTAATT6537299CCATAAAAGTTGACGCTTGCGTTTACAGCATACTCTAAGACCTTTTGTAA
Euplexia lucipara genome assembly, chromosome: 23.
OV179165.1:16177859-16177878
CAATTGGTATTTATAATCTTTTCTGTAATT16177859CCATAAAAGTTGACGCTTGCGTTTACAGCATACTCTAAGACCTTTTGTAA
Lymantria dispar genome assembly, chromosome: 1.
OY755126.1:36995718-36995737
TATTTTGGTTAGTGCATTTTTTCTATACTG36995718CCATAAAAGTTGACGCTTGCATTTACAACAAAGCCTAATACCTCTTGTGA
Lymantria dispar genome assembly, chromosome: 3.
OY755128.1:39225577-39225596
TATTTTGGTTAGTGCATTTTTTCTATACTG39225577CCATAAAAGTTGACGCTTGCGTTTACAACAAAGCCTAATACCTCTAGTGA
Lymantria dispar genome assembly, chromosome: 4.
OY755129.1:26912868-26912887
ATTTTGGTTAGTGCATTTTTTTCTATACTG26912868CCATAAAAGTTGACGCTTGCGTTTACAACAAAGCCTAATACCTCTTGTGA
Lymantria dispar genome assembly, chromosome: 6.
OY755131.1:1918520-1918539
ATTTTGGTTAGTGCATTTTTTTCTATACTG1918520CCATAAAAGTTGACGCTTGCGTTTACAACAAAGCCTAATACCTCTTGTGA
Lymantria dispar genome assembly, chromosome: 8.
OY755133.1:7706639-7706658
ATTTTGGTTAGTGCATTTTTTTCTATACTG7706639CCATAAAAGTTGACGCTTGCGTTTACAACAAAGCCTAATACCTCTTGTGA
Lymantria dispar genome assembly, chromosome: 8.
OY755133.1:35120811-35120830
ATTTTGGTTAGTGCATTTTTTTCTATACTG35120811CCATAAAAGTTGACGCTTGCGTTTACAACGAAGCTTAATACCTCTTGTGA
Lymantria dispar genome assembly, chromosome: 26.
OY755151.1:2565792-2565811
ATTTTGGTTAGTGCATTTTTTTCTATACTG2565792CCATAAAAGTTGACGCTTGCGTTTACAACAAAGCCTAATACCTCTTGTGA
Lymantria dispar genome assembly, chromosome: 26.
OY755151.1:19474326-19474345
ATTTTGGTTAGTGCATTTTTTTCTATACTG19474326CCATAAAAGTTGACGCTTGCGTTTACAACAAAGCCTAATACCTCTTGTGA
E012389-024-012-A20-SP6 MPIZ-ADIS-024-leaf Beta vulgaris cDNA clone 024-012-A20 5-PRIME, mRNA sequence.
BQ586621.1:11-30
GAGAAAAGAT11GCAAGCGTCAACTTTTATGGTCAAAGGCAATTTAGGGATTGAAGTTCGAA
TSA: Beta vulgaris Locus_30285_Transcript_2/2_Confidence_1.000_Length_2217 mRNA sequence.
JP520945.1:215-234
CACTAGGTTTTAAAAAAAGAGAGAAAAGAT215GCAAGCGTCAACTTTTATGGTCAAAGGCAATTTAGGGATTGAAGTTCGAA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 2.
OX392548.1:4434083-4434102
TTTTAGGTTTTAAAAAAAGAGAGAAAAGAT4434083GCAAGCGTCAACTTTTATGGTCAAAGGCAATTTAGGGATTGAAGTTCGAA
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 2.
OX392557.1:4491446-4491465
TTTTAGGTTTTAAAAAAAGAGAGAAAAGAT4491446GCAAGCGTCAACTTTTATGGTCAAAGGCAATTTAGGGATTGAAGTTCGAA
Lymantria monacha genome assembly, chromosome: 6.
LR991087.1:34707824-34707843
TTACTAGAGGTATTAGGCTTTGTTGTAGAC34707824GCAAGCGTCAACTTTTATGGCAATATAGAAAAAACTGCACTAACCGAAAT
Lymantria monacha genome assembly, chromosome: 6.
LR991087.1:36061965-36061984
TTACTAGAGGTATTAGGCTTTGTTGTAGAC36061965GCAAGCGTCAACTTTTATGGCAATATAGAAAAAACTGCACTAACCAAAAT
Lymantria monacha genome assembly, chromosome: 22.
LR991103.1:17034288-17034307
TTACTAGAGGTATTAGGCTTTGTTGTAGAC17034288GCAAGCGTCAACTTTTATGGCAATATAGAAAAAACTGCACTAACCAAAAT
Euplexia lucipara genome assembly, chromosome: 2.
OV179144.1:10129476-10129495
TTACAAAAGGTCTTAGAGTATGCTGTAAAC10129476GCAAGCGTCAACTTTTATGGAATTACAGAAAAGATCCCACAGAAAATAAT
Euplexia lucipara genome assembly, chromosome: 14.
OV179156.1:3855616-3855635
TTACAAAAGGTCTTAGAGTATGCTGTAAAC3855616GCAAGCGTCAACTTTTATGGAATTACAGAAAAGATCCCACAGAAAATAAT
Euplexia lucipara genome assembly, chromosome: 14.
OV179156.1:14795708-14795727
TTACAAAAGGTCTTAGAGTATGCTGTAAAC14795708GCAAGCGTCAACTTTTATGGAATTACAGAAAAGATCCCACAGAAAATAAT
Euplexia lucipara genome assembly, chromosome: 14.
OV179156.1:20186871-20186890
TTACAAAAGGTCTTAGAGTATGCTGTAAAC20186871GCAAGCGTCAACTTTTATGGAATTACAGAAAAGATCCCACAGAAAATAAT
Euplexia lucipara genome assembly, chromosome: 17.
OV179159.1:8014935-8014954
TTACAAAAGGTCTTAGAGTATGCTGTAAAC8014935GCAAGCGTCAACTTTTATGGAATTACAGAAAAGATCCCACAGAAAATAAT
Euplexia lucipara genome assembly, chromosome: 27.
OV179169.1:7181199-7181218
TTACAAAAGGTCTTAGAGTATGCTGTAAAC7181199GCAAGCGTCAACTTTTATGGAATTACAGAAAAGATCCCACAGAAAATAAT
Lymantria dispar genome assembly, chromosome: 3.
OY755128.1:32988212-32988231
TCACAAGAGGTATTAGGCTTTGTTGTAAAC32988212GCAAGCGTCAACTTTTATGGCAGTATAGAAAAAAATGCACTAACCAAAAT
Lymantria dispar genome assembly, chromosome: 3.
OY755128.1:39323737-39323756
TCACAAGAGGTATTAGGCTTTGTTGTAAAC39323737GCAAGCGTCAACTTTTATGGCAGTATAGAAAAAAATGCACTAACCAAAAT
Lymantria dispar genome assembly, chromosome: 4.
OY755129.1:32462631-32462650
ATCACAAGAGGTATAGGCTTTGTTGTAAAC32462631GCAAGCGTCAACTTTTATGGCAGTATAGAAAAAAATGCACTAACCAAAAT
Lymantria dispar genome assembly, chromosome: 12.
OY755137.1:2919923-2919942
TCACAAGAGGTATTAGGCTTTGTTGTAAAC2919923GCAAGCGTCAACTTTTATGGCAGTATAGAAAAAAATGCACTAACCAAAAT
Lymantria dispar genome assembly, chromosome: 23.
OY755148.1:9713423-9713442
TCACAAGAGGTATTAGGCTTTGTTGTAAAC9713423GCAAGCGTCAACTTTTATGGCAGTATAGAAAAAAATGCACTAACCAAAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCATAAAAGTTGACGCTTGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCATAAAAGTTGACGCTTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.272 | 0.263 | search_plus_done; http://172.18.8.135:50400/match?q=CCATAAAAGTTGACGCTTGC&k=0&no_gap=0&offset=0&limit=50
0.570 | 0.299 | search_minus_done; http://172.18.8.135:50400/match?q=GCAAGCGTCAACTTTTATGG&k=0&no_gap=0&offset=0&limit=29
0.582 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).