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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:28:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Bos mutus isolate yakQH1 chromosome 13.
CP027081.1:19975676-19975695
TTCTGAGCTTGGCTACTGCCCTGGGTTGGT19975676CCATAATGGCAAATCGGTCTGCCAAAAAGAAAACTTTCAAAGGCAAACCT
Bos taurus genome assembly, chromosome: 13.
LR962743.1:27577177-27577196
TTCTGAGCTTGGCTACTGCCCTGGGTTGGT27577177CCATAATGGCAAATCGGTCTGCCAAAAAGAAAACTTTCAAAGGCAAACCT
Bos taurus genome assembly, chromosome: 13.
LR962868.1:27169756-27169775
TTCTGAGCTTGGCTACTGCCCTGGGTTGGT27169756CCATAATGGCAAATCGGTCTGCCAAAAAGAAAACTTTCAAAGGCAAACCT
Cervus elaphus genome assembly, chromosome: 23.
OU343100.1:26940222-26940241
TTCTGAGCTTGGCAACTGCCCTGGGTTGGA26940222CCATAATGGCAAATCGGTCTGCCAAAAAGAAAACTTTCAAAAGCAAACCT
Bos gaurus x Bos taurus genome assembly, chromosome: 13.
OX258967.1:27813839-27813858
TTCTGAGCTTGGCTACTGCCCTGGGTTGGT27813839CCATAATGGCAAATCGGTCTGCCAAAAAGAAAACTTTCAAAGGCAAACCT
Bos taurus strain mammals genome assembly, chromosome: 13.
OX344702.1:30477432-30477451
TTCTGAGCTTGGCTACTGCCCTGGGTTGGT30477432CCATAATGGCAAATCGGTCTGCCAAAAAGAAAACTTTCAAAGGCAAACCT
Rangifer tarandus platyrhyncus genome assembly, chromosome: 11.
OX459947.2:25883079-25883098
TTCTGAGCTTGGCAACTGCCCTAGGCTGGA25883079CCATAATGGCAAATCGGTCTGCCAAAAAGAAAACTTTCAAAAGCAAACCC
Bos taurus genome assembly, chromosome: Bta13.
OY997241.1:28897611-28897630
TTCTGAGCTTGGCTACTGCCCTGGGTTGGT28897611CCATAATGGCAAATCGGTCTGCCAAAAAGAAAACTTTCAAAGGCAAACCT
USDA-FP_00502 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00502 5', mRNA sequence.
BQ623411.1:129-148
TCCCGTCCACAAGAAGATCCCGGTTCTTAT129CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
UCRCS01_03dc06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_03dc06, mRNA sequence.
CB292009.1:219-238
TCCCGTCCACAAGAAGATCCCGGTTCTTAT219CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
CGF1004386_E11 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IVF_E11 5', mRNA sequence.
CK936124.1:91-110
TCCCGTCCACAAGAAGATCCCGGTTCTTAT91CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
CGF1004441_E07 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIF_E07 5', mRNA sequence.
CK938536.1:238-257
TCCCGTCCACAAGAAGATCCCGGTTCTTAT238CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
UCRCS07_2G10_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-2G10-N20-1-6.g, mRNA sequence.
CX045585.1:108-127
TCCCGTCCACAAGAAGATCCCGGTTCTTAT108CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
C06012A01SK RindPdig24 Citrus clementina cDNA clone C06012A01, mRNA sequence.
CX298415.1:485-504
TCCCGTCCACAAGAAGATCCCGGTTCTTAT485CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
UCRPT02_2E10_g2 Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-2E10-I19-1-5.g2, mRNA sequence.
CX637887.1:261-280
TCCCGTCCATAAGAAGATCCCGGTTCTTAT261CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
KN0AAL1DE04FM2 KCl-Salt1 Citrus reshni cDNA 5', mRNA sequence.
DY306417.1:180-199
TCCCGTCCACAAGAAGATCCCGGTTCTTAT180CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
Volcani_8_06_B2 Volcani08 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
EX449306.1:266-285
TCCCGTCCACAAGAAGATCCCGGTTCTTAT266CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
CS00-C3-700-016-G12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY693643.1:200-219
TCCCGTCCACAAGAAGATCCCGGTTCTTAT200CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
CR05-C3-701-018-A08-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY794354.1:275-294
TCCCGTCCACAAGAAGATCCCGGTTCTTAT275CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
CR05-C3-701-029-B06-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY795342.1:196-215
TCCCGTCCACAAGAAGATCCCGGTTCTTAT196CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
LT33-C1-003-109-D03-CT.F Tahiti lime leaf, greenhouse plant Citrus latifolia cDNA, mRNA sequence.
EY886629.1:175-194
TCCCGTCCATAAGAAGATCCCGGTTCTTAT175CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
TS27-C2-300-036-B04-CT.F Sunki mandarin bark, greenhouse plant Citrus sunki cDNA, mRNA sequence.
EY889240.1:224-243
TCCCGTCCACAAGAAGATCCCGGTTCTTAT224CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
TS27-C2-300-047-G08-CT.F Sunki mandarin bark, greenhouse plant Citrus sunki cDNA, mRNA sequence.
EY891226.1:209-228
TCCCGTCCACAAGAAGATCCCGGTTCTTAT209CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
C31101G06EF AbioticR1 Citrus reshni cDNA clone C31101G06, mRNA sequence.
FC869467.1:236-255
TCCCGTCCACAAGAAGATCCCGGTTCTTAT236CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
C31108A12EF AbioticR1 Citrus reshni cDNA clone C31108A12, mRNA sequence.
FC870052.1:236-255
TCCCGTCCACAAGAAGATCCCGGTTCTTAT236CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
KN0AAL1DE04FM2 KCl_Salt1 Citrus reshni cDNA clone KN0AAL1DE04, mRNA sequence.
FC918821.1:178-197
TCCCGTCCACAAGAAGATCCCGGTTCTTAT178CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
KumquatSL_FI3-B03.g Fortunella margarita adult leaf subtraction library Citrus japonica var. margarita cDNA, mRNA sequence.
GW689238.1:80-99
TCCCGTCCATAAGAAGATCCCGGTTCTTAT80CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGT
Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:2462963-2462982
TCCCGTCCACAAGAAGATCCCGGTTCTTAT2462963CCATAATGGCAAATCGGTCTGTGAGTCATCCATCATTGTTCAGTACATTG
Rangifer tarandus platyrhyncus genome assembly, chromosome: 8.
OX596092.1:55090271-55090290
GGGTTTGCTTTTGAAAGTTTTCTTTTTGGC55090271AGACCGATTTGCCATTATGGTCCAGCCTAGGGCAGTTGCCAAGCTCAGAA
UCRCS01_03dc06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_03dc06, mRNA sequence.
CB292008.1:687-706
CAATGTACTGAACAATGATGGATGACTCAC687AGACCGATTTGCCATTATGGATAAGAACCGGGATCTTCTTGTGGACGGGA
UCRPT02_2E10_t Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-2E10-I19-1-6.t, mRNA sequence.
CX637888.1:699-718
CAATGTACTGAACAATGATGGATGACTCAC699AGACCGATTTGCCATTATGGATAAGAACCGGGATCTTCTTATGGACGGGA
Bos taurus clone CH240-40D12, WORKING DRAFT SEQUENCE, 9 unordered pieces.
AC155667.4:71950-71969
AGGTTTGCCTTTGAAAGTTTTCTTTTTGGC71950AGACCGATTTGCCATTATGGACCAACCCAGGGCAGTAGCCAAGCTCAGAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCATAATGGCAAATCGGTCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCATAATGGCAAATCGGTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.274 | 1.265 | search_plus_done; http://172.18.8.135:50400/match?q=CCATAATGGCAAATCGGTCT&k=0&no_gap=0&offset=0&limit=50
1.409 | 0.136 | search_minus_done; http://172.18.8.135:50400/match?q=AGACCGATTTGCCATTATGG&k=0&no_gap=0&offset=0&limit=22
1.412 | 0.003 | cgi_end;

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