GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-13 05:21:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036M17, complete sequence.
AC189325.2:61274-61294
ATATATATTAAAATTTGCTAAACTTCCACA61274CCATACCCTGAACCGAAGGTCCGAAACACATGAAAACTTCCCAGCAGTATC
Brassica napus clone BAC CZ7N2, complete sequence.
KC206509.1:165630-165650
ATATATATATAAATTTGCTAAACTTCCACA165630CCATACCCTGAACCGAAGGTCCGAAACACACGAAAACTTCCCAGCAGTATC
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:2010962-2010982
GATACTGCTGGGAAGTTTTCGTGTGTTTCG2010962GACCTTCGGTTCAGGGTATGGTGTGGAAGTTTAGCAAATCTATATATATAT
Brassica napus genome assembly, chromosome: A01.
HG994355.1:1975303-1975323
GATACTGCTGGGAAGTTTTCGTGTGTTTCG1975303GACCTTCGGTTCAGGGTATGGTGTGGAAGTTTAGCAAATTTATATATATAT
Brassica rapa genome, scaffold: A01.
LR031571.1:1965829-1965849
GATACTGCTGGGAAGTTTTCGTGTGTTTCG1965829GACCTTCGGTTCAGGGTATGGTGTGGAAGTTTAGCAAATTTATATATATAT
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:1965955-1965975
GATACTGCTGGGAAGTTTTCGTGTGTTTCG1965955GACCTTCGGTTCAGGGTATGGTGTGGAAGTTTAGCAAATTTATATATATAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCATACCCTGAACCGAAGGTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCATACCCTGAACCGAAGGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.100 | 0.091 | search_plus_done; http://172.18.8.135:50400/match?q=CCATACCCTGAACCGAAGGTC&k=0&no_gap=0&offset=0&limit=50
0.131 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=GACCTTCGGTTCAGGGTATGG&k=0&no_gap=0&offset=0&limit=48
0.133 | 0.003 | cgi_end;

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