GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 08:31:40, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

VVS4 Grapevine (M. Thomas) Vitis vinifera STS genomic, sequence tagged site.
G64024.1:1-24
1CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAATAA
Vitis vinifera cultivar Black Monukka isolate seedless chromosome 08.
CP140992.1:12626304-12626327
GAAGAATCAAACTTAGGTAGATATGGTGCT12626304CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAATAA
Vitis vinifera cultivar Black Monukka isolate seedless chromosome 08.
CP141011.1:12510350-12510373
GAAGAATCAAACTTAGGTAGATATGGTGCT12510350CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAATAA
Vitis vinifera cultivar Thompson Seedless isolate seedless chromosome 08.
CP142472.2:12278424-12278447
GAAGAATCAAACTTAGGTAGATATGGTGCT12278424CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAATAA
Vitis vinifera cultivar Thompson Seedless isolate seedless chromosome 08.
CP142491.2:12519213-12519236
GAAGAATCAAACTTAGGTAGATATGGTGCT12519213CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAATAA
Vitis vinifera x Vitis labrusca cultivar Shine Muscat chromosome 08.
CP161600.1:12381682-12381705
GAAGAATCAAACTTAGGTAGATATGGTGCT12381682CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAAGAA
Vitis vinifera cultivar Pinot Noir chromosome 08.
CP161638.1:12410381-12410404
GAAGAATCAAACTTAGGTAGATATGGTGCT12410381CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAAGAA
Vitis vinifera cultivar Muscat Hamburg chromosome 08.
CP161657.1:11161231-11161254
GAAGAATCAAACTTAGGTAGATATGGTGCT11161231CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAAGAA
Vitis vinifera cultivar Muscat Hamburg chromosome 08.
CP161676.1:10951194-10951217
GAAGAATCAAACTTAGGTAGATATGGTGCT10951194CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAATAA
Vitis vinifera cultivar Manicure Finger chromosome 08.
CP161695.1:12628135-12628158
GAAGAATCAAACTTAGGTAGATATGGTGCT12628135CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAATAA
Vitis vinifera cultivar Manicure Finger chromosome 08.
CP161714.1:12637906-12637929
GAAGAATCAAACTTAGGTAGATATGGTGCT12637906CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAATAA
Vitis vinifera cultivar Hongmunage chromosome 08.
CP161752.1:12911700-12911723
GAAGAATCAAACTTAGGTAGATATGGTGCT12911700CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAATAA
Vitis vinifera cultivar Baimunage chromosome 08.
CP161771.1:12828166-12828189
GAAGAATCAAACTTAGGTAGATATGGTGCT12828166CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAATAA
Vitis vinifera genome assembly, chromosome: 08.
OZ210985.1:12256544-12256567
GAAGAATCAAACTTAGGTAGATATGGTGCT12256544CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAAGAA
Vitis pseudoreticulata genome assembly, chromosome: 08.
OZ211428.1:12460202-12460225
GAAGAATCAAACTTAGGTAAATATGGTGCT12460202CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAAGAA
Vitis vinifera genome assembly, chromosome: 08.
OZ211466.1:11999104-11999127
GAAGAATCAAACTTAGGTAGATATGGTGCT11999104CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAAGAA
Vitis pseudoreticulata genome assembly, chromosome: 08.
OZ211505.1:11255990-11256013
GAAGAATCAAACTTAGGTAAATATGGTGCT11255990CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAAGAA
Vitis cinerea var. helleri x Vitis vinifera genome assembly, chromosome: 08.
OZ211543.1:11184974-11184997
GAAGAATCAAACTTAGGTAGATATGGTGCT11184974CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAAGAA
Vitis cinerea var. helleri x Vitis riparia genome assembly, chromosome: 08.
OZ211651.1:12966945-12966968
GAAGAATCAAACTTAGGTAGATATGGTGCT12966945CCATCAGTGATAAAACCTAATGCCAGGTTGGAGAGAGGGAGATTGTTCAAAGAA
Vitis vinifera contig VV78X147810.38, whole genome shotgun sequence.
AM485766.2:1471-1494
TTCTTTGAACAATCTCCCTCTCTCCAACCT1471GGCATTAGGTTTTATCACTGATGGAGCACCATATCTACCTAAGTTTGATTCTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCATCAGTGATAAAACCTAATGCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCATCAGTGATAAAACCTAATGCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.122 | 0.114 | search_plus_done; http://172.18.8.135:50800/match?q=CCATCAGTGATAAAACCTAATGCC&k=0&no_gap=0&offset=0&limit=50
0.185 | 0.063 | search_minus_done; http://172.18.8.135:50800/match?q=GGCATTAGGTTTTATCACTGATGG&k=0&no_gap=0&offset=0&limit=31
0.186 | 0.001 | cgi_end;

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