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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-08 20:11:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Gymnoscopelus braueri genome assembly, chromosome: 2.
OY725509.1:26920156-26920178
TCCCTCTCCCTTTTCCCTCGCCCTCCACCA26920156CCATCATTGTACTGGTCTTCTCCAGCCTATACTGACTGCGTGATGATATGATT
Gymnoscopelus microlampas genome assembly, chromosome: 2.
OY732704.1:25219971-25219993
TCCCTCTCCCTTTTCCCTCGCCCTCCACCA25219971CCATCATTGTACTGGTCTTCTCCAGCCTATACTGACTGCGTGATGATATGATT
TSA: Pyrus communis mRNA, contig: lc23997.
FX632420.1:305-327
TGGCAGACTGGGCGACATTGCCGGCCTTGT305CCATCATTGTACTGGTCTTCTCCTGAGCTTGGCCCTTGGCCACTCCAGCGTTG
TSA: Pyrus communis mRNA, contig: lc82480.
FX656967.1:22-44
GGGCGACATTGCCGGCCTTGT22CCATCATTGTACTGGTCTTCTCCTGAGCTTGGCCCTTGGCCACGGCACAGGGT
TSA: Pyrus x bretschneideri Unigene41532_XinShao mRNA sequence.
JR633138.1:455-477
TGGCAGACTGGGCGACATTGCCGGCCTTGT455CCATCATTGTACTGGTCTTCTCCTGAGCTTGGCCCTTGGCCACTCCAGCGTTG
Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143383.1:4711733-4711755
TGGCAGACTGGGCGGCATTGTTGGCCTTGT4711733CCATCATTGTACTGGTCTTCTCCTGTCAAATCCCAAGTCATCCAGCACAACAC
Pyrus communis genome assembly, chromosome: 7.
OY757074.1:4106087-4106109
TGGCAGACTGGGCGACATTGCCGGCCTTGT4106087CCATCATTGTACTGGTCTTCTCCTGTCAAATCCCAAATCATCCAGCACAACAC
Pyrus pyrifolia mRNA, clone: NFR1_02_42, 5' end sequence, expressed in fruit.
HX745826.1:117-139
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA117GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
Pyrus pyrifolia mRNA, clone: NFR1_08_91, 5' end sequence, expressed in fruit.
HX746324.1:114-136
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA114GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
Pyrus pyrifolia mRNA, clone: NFR1_10_67, 5' end sequence, expressed in fruit.
HX746465.1:116-138
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA116GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
Pyrus pyrifolia mRNA, clone: NFR1_19_01, 5' end sequence, expressed in fruit.
HX747169.1:108-130
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA108GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
Pyrus pyrifolia mRNA, clone: NFW1_06_84, 5' end sequence, expressed in flower bud.
HX761631.1:139-161
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA139GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
Pyrus pyrifolia mRNA, clone: NFW2_01_91, 5' end sequence, expressed in flower bud.
HX762183.1:116-138
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA116GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
Pyrus pyrifolia mRNA, clone: NFW2_04_94, 5' end sequence, expressed in flower bud.
HX762396.1:115-137
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA115GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
Pyrus pyrifolia mRNA, clone: NFW2_32_60, 5' end sequence, expressed in flower bud.
HX764560.1:62-84
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA62GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
Pyrus pyrifolia mRNA, clone: NLE1_01_88, 5' end sequence, expressed in leaf bud.
HX765863.1:144-166
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA144GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus pyrifolia mRNA, contig: contig_2417.
FX395987.1:164-186
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA164GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc70.
FX608657.1:226-248
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA226GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc312.
FX608899.1:119-141
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA119GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc5833.
FX614420.1:115-137
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA115GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc11066.
FX619650.1:105-127
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA105GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc16994.
FX625549.1:26-48
CTGGAGTGGCCAAGGGCCAAGCTCA26GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc18549.
FX627087.1:84-106
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA84GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc19933.
FX628453.1:99-121
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA99GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc20299.
FX628810.1:31-53
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA31GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc20635.
FX629143.1:113-135
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA113GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc23344.
FX631790.1:87-109
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA87GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc24826.
FX633218.1:101-123
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA101GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc26841.
FX635167.1:73-95
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA73GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc27744.
FX636031.1:81-103
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA81GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc28514.
FX636771.1:97-119
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA97GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc28592.
FX636843.1:55-77
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA55GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCTAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc29382.
FX637602.1:88-110
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA88GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc30943.
FX639088.1:85-107
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA85GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc31523.
FX639624.1:109-131
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA109GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc35908.
FX643625.1:81-103
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA81GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc36891.
FX644522.1:55-77
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA55GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc37851.
FX645398.1:80-102
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA80GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc38061.
FX645598.1:77-99
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA77GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc38505.
FX646002.1:83-105
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA83GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc39374.
FX646792.1:84-106
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA84GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc40167.
FX647499.1:103-125
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA103GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc40426.
FX647720.1:81-103
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA81GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTTCCA
TSA: Pyrus communis mRNA, contig: lc40650.
FX647923.1:81-103
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA81GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc41002.
FX648231.1:56-78
AACGCTGGAGTGGCCAAGGGCCAAGCTCGA56GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc41039.
FX648266.1:84-106
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA84GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc41105.
FX648319.1:39-61
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA39GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc41582.
FX648738.1:26-48
CTGGAGTGGCCAAGGGCCAAGCTCA26GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc41718.
FX648848.1:34-56
AAACACTGGAGTGGCCAAGGGCCAAGCTCA34GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCTCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc42217.
FX649287.1:81-103
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA81GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc42976.
FX649956.1:81-103
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA81GGAGAAGACCAGTACAATGATGGACAAAGGCCGGCAATGTCGCCCAGTCTGCC
TSA: Pyrus communis mRNA, contig: lc43119.
FX650079.1:84-106
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA84GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc43176.
FX650129.1:78-100
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA78GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc44593.
FX651380.1:34-56
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA34GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATAGTACGCCCAAGTCTG
TSA: Pyrus communis mRNA, contig: lc51167.
FX656029.1:16-38
CAAGGGCCAAGCTCA16GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc86828.
FX657067.1:31-53
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA31GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc87307.
FX657083.1:4-26
TCA4GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc98792.
FX657296.1:84-106
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA84GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
TSA: Pyrus communis mRNA, contig: lc115238.
FX657446.1:72-94
CAACGCTGGAGTGGCCAAGGGCCAAGCTCA72GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGTCGCCCAGTCTGCCA
Crataegus laevigata genome assembly, chromosome: 17.
OY756954.1:27229295-27229317
GCTGGATGATTTGGGATTTGGGATTTGACA27229295GGAGAAGACCAGTACAATGATGGACAAGGCCGGCAATGCCGCCCAGTCTGCCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCATCATTGTACTGGTCTTCTCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCATCATTGTACTGGTCTTCTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.374 | 0.365 | search_plus_done; http://172.18.8.135:50400/match?q=CCATCATTGTACTGGTCTTCTCC&k=0&no_gap=0&offset=0&limit=50
1.503 | 1.129 | search_minus_done; http://172.18.8.135:50400/match?q=GGAGAAGACCAGTACAATGATGG&k=0&no_gap=0&offset=0&limit=43
1.538 | 0.035 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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