GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:16:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica oleracea var. viridis mRNA, clone: KALE-031E15, 5' end sequence.
DK467506.1:299-318
GGCTGACTTTCAAAATCTTGTTACAAATAT299CCATCCTGAGTTTATTTGAGCCTGTGGTTGAACAAAACCTGTACTACTCA
BNSCS2CT_UP_173_C02_27APR2007_012 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV028426.1:354-373
GGCTGACTTTCAAAATCTTCTTACAAATAT354CCATCCTGAGTTTATTTGAGCCTGTGGTTGAACAAAACCTGTACTACTCA
BNSCS4CT_UP_083_F02_18MAY2007_006 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV064753.1:273-292
GGCTAACTTTCAAAATCTTATTTCAAATAT273CCATCCTGAGTTTATTTGAGCCTGTGGTGGAGCAAAACCTGTACTACTCA
RR1CY25TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX750398.1:310-329
GGCTGACTTTCAAAATCTTATTACAAATAT310CCATCCTGAGTTTATTTGAGCCTGTGGTTGAACAAAACCTGTACTACTCA
RS3CO76TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX905788.1:260-279
GGCTGACTTTCAAAATCTTATTACAAATAT260CCATCCTGAGTTTATTTGAGCCTGTGGTTGAACAAAACCTGTACTACTCA
RR4E147TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY924369.1:255-274
GGCTGACTTTCAAAATCTTATTACAAATAT255CCATCCTGAGTTTATTTGAGCCTGTGGTTGAACAAAACCTGTACTACTCA
RR1FO86TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD535990.1:39-58
AGGCTGACTTCAAAATCTTATTACAAATAT39CCATCCTGAGTTTATTTGAGCCTGTGGTTGAACAAAACCTGTACTACTCA
RR1FX23TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD961942.1:316-335
GGCTGACTTTCAAAATCTTATTACAAATAT316CCATCCTGAGTTTATTTGAGCCTGTGGTTGAACAAAACCTGTACTACTCA
odg54f10.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH937463.1:561-580
GGCTAACTTTCAAAATCTTATTTCAAATAT561CCATCCTGAGTTTATTTGAGTAAGACTCTGTTACATCATGTCTATTTCAC
KBrH091M24R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH091M24, genomic survey sequence.
DU124526.1:754-773
GGCTGACTTTCAAAATCTTCTTACAAATAT754CCATCCTGAGTTTATTTGAGTATGACTTTGTTACATCATTTCTGATTCAC
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:64842350-64842369
GGCTAACTTTCAAAATCTTATTTCAAATAT64842350CCATCCTGAGTTTATTTGAGTAAGTCTCTGTTACATCATGTCTATTTCAC
Brassica napus genome assembly, chromosome: A10.
HG994364.1:16961729-16961748
GGCTGACTTTCAAAATCTTCTTACAAATAT16961729CCATCCTGAGTTTATTTGAGTATGACTTTGTTACATCATTTCTGATTCAC
Brassica napus genome assembly, chromosome: C09.
HG994373.1:59400723-59400742
GGCTGACTTTCAAAATCTTGTTACAAATAT59400723CCATCCTGAGTTTATTTGAGTATGACTTTGTTACATCATTTCTGATTCAC
Brassica rapa genome, scaffold: A10.
LR031577.1:13888576-13888595
GGCTGACTTTCAAAATCTTCTTACAAATAT13888576CCATCCTGAGTTTATTTGAGTATGACTTTGTTACATCATTTCTGATTCAC
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:57587444-57587463
GGCTGACTTTCAAAATCTTGTTACAAATAT57587444CCATCCTGAGTTTATTTGAGTATGACTTTGTTACATCATTTCTGATTCAC
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:16622437-16622456
GGCTGACTTTCAAAATCTTCTTACAAATAT16622437CCATCCTGAGTTTATTTGAGTATGACTTTGTTACATCATTTCTGATTCAC
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:3424712-3424731
GGCTGACTTTCAAAATCTTATTACAAATAT3424712CCATCCTGAGTTTATTTGAGTATAAGTTATTGTTACATCGTTTCTGATTC
BOMKY52TR BO_2_3_KB Brassica oleracea genomic clone BOMKY52, genomic survey sequence.
BH721795.1:117-136
GTGAATCAGAAATGATGTAACAAAGTCATA117CTCAAATAAACTCAGGATGGATATTTGTAACAAGATTTTGAAAGTCAGCC
BOOAL40TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BOOAL40, genomic survey sequence.
BZ440274.1:798-817
GTGAATCAGAAATGATGTAACAAAGTCATA798CTCAAATAAACTCAGGATGGGA
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:3819742-3819761
GTGAATCAGAAATGATGTAACAAAGTCATA3819742CTCAAATAAACTCAGGATGGATATTTGTAAGAAGATTTTGAAAGTCAGCC
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:6063123-6063142
GTGAATCAGAAATGATGTAACAAAGTCATA6063123CTCAAATAAACTCAGGATGGATATTTGTAACAAGATTTTGAAAGTCAGCC
Brassica napus genome assembly, chromosome: C02.
HG994366.1:3456216-3456235
GTGAAATAGACATGATGTAACAGAGACTTA3456216CTCAAATAAACTCAGGATGGATATTTGAAATAAGATTTTGAAAGTTAGCC
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:3476970-3476989
GTGAAATAGACATGATGTAACAGAGACTTA3476970CTCAAATAAACTCAGGATGGATATTTGAAATAAGATTTTGAAAGTTAGCC
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:29554670-29554689
GAATCAGAAACGATGTAACAATAACTTATA29554670CTCAAATAAACTCAGGATGGATATTTGTAATAAGATTTTGAAAGTCAGCC
Arabis alpina genome assembly, chromosome: 8.
LT669795.1:9354976-9354995
TGAATCAGAAATGATGAAAACTAAGTCTTA9354976CTCAAATAAACTCAGGATGGATATTTGAAAGAAGATTTTAAAAGTCATCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCATCCTGAGTTTATTTGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCATCCTGAGTTTATTTGAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.917 | 0.909 | search_plus_done; http://172.18.8.135:50400/match?q=CCATCCTGAGTTTATTTGAG&k=0&no_gap=0&offset=0&limit=50
1.054 | 0.137 | search_minus_done; http://172.18.8.135:50400/match?q=CTCAAATAAACTCAGGATGG&k=0&no_gap=0&offset=0&limit=33
1.059 | 0.005 | cgi_end;

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