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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 14:12:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Canis lupus familiaris breed Labrador retriever chromosome 04a.
CP050572.1:29400579-29400598
CTGCTCTCTTTGCCCCTTCCCCGCTGTCCC29400579CCATCGTTGTCATCTCTCCAGACATGATCTTGGTCTAAGGCCTCCAGCTC
Canis lupus familiaris breed Labrador retriever chromosome 04b.
CP050625.1:29397022-29397041
CTGCTCTCTTTGCCCCTTCCCCGCTGTCCC29397022CCATCGTTGTCATCTCTCCAGACATGATCTTGGTCTAAGGCCTCCAGCTC
Canis lupus genome assembly, chromosome: 4.
HG994386.1:29486321-29486340
CTGCTCTCTTTGCCCCTTCCCCGCTGTCCC29486321CCATCGTTGTCATCTCTCCAGACATGATCTTGGTCTAAGGCCTCCAGCTC
TSA: Pyrus x bretschneideri Unigene75618_XinShao mRNA sequence.
JR661027.1:402-421
TCTTCCCTGCAATTGAAAAGTCGAGGCTTG402CCATCGTTGTCATCTCTCCAAATTACGCTTCTTCCAAATGGTGCCTGAAC
tigr-gss-dog-17000333808556 Dog Library Canis lupus familiaris genomic, genomic survey sequence.
CE286597.1:274-293
CTGCTCTCTTTGCCCCTTCCCCGCTGTCCC274CCATCGTTGTCATCTCTCCAGACATGATCTTGGTCTAAGGCCTCCAGCTC
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:1144488-1144507
TCTTCCCGGAAATTGCAAAGTCGAGGCTTG1144488CCATCGTTGTCATCTCTCCAGATTACGCTTCTTCAAAATGGTGCCTGAAC
Aegilops speltoides subsp. speltoides genome assembly, chromosome: 5B.
OX082601.1:32188505-32188524
CACCGTGGCGACACCTTGATCTCCATCGTA32188505CCATCGTTGTCATCTCTCCAACTATTGCTTCCACGACTATCGCTACCGCT
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:764392-764411
GTTCAGGCACCATTTTGAAGAAGCGTAATC764392TGGAGAGATGACAACGATGGCAAGCCTCGACTTTGCAATTTCCGGGAAGA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:848553-848572
GTTCAGGCACCATTTTGAAGAAGCGTAATC848553TGGAGAGATGACAACGATGGCAAGCCTCGACTTTGCAATTTCCGGGAAGA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:1024533-1024552
GTTCAGGCACCATTTTGAAGAAGCGTAATT1024533TGGAGAGATGACAACGATGGCAAGCCTCGACTTTTCAATTGCCGGGAAGA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:979866-979885
GTTCAGGCACCATTTTGAAGAAGCGTAATC979866TGGAGAGATGACAACGATGGCAAGCCTCGACTTTGCAATTTCCGGGAAGA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1416085-1416104
GTTGAGGCACCATTTTGAAGAAGCGTAATC1416085TGGAGAGATGACAACGATGGCAAGCCTCGACTTTGCAATTTCCGGGAAGA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1473233-1473252
GTTCAGGCACCATTTTGAAGAAGCGTAATC1473233TGGAGAGATGACAACGATGGCAAGCCTCGACTTTTCAATTTCCGGGAAGA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1538949-1538968
GTTCAGGCACCATTTTGAAGAAGCGTAATC1538949TGGAGAGATGACAACGATGGCAAGCCTCGACTTTGCAATTTCCGGGAAGA
Malus domestica genome assembly, chromosome: 10.
OU744551.1:1180845-1180864
GTTCAGGCACCATTTTGAAGAAGCGTAATC1180845TGGAGAGATGACAACGATGGCAAGCCTCGACTTTGCAATTTCCGGGAAGA
Triticum monococcum genome assembly, chromosome: 7A.
OY737864.1:609147057-609147076
AGCGGTAGCAATAGTCGTAGAAGCAATAGT609147057TGGAGAGATGACAACGATGGTTCGATGAAGATCAAGGTGTCAAGTCGGTG
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:1138278-1138297
GTTCAGGCACCATTTTGAAGAAGCGTAATT1138278TGGAGAGATGACAACGATGGCAAGCCTCGACTTTTCAATTGCCGAGAAGA
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:1181555-1181574
GTTCAGGCACCATTTTGAAGAAGCGTAATT1181555TGGAGAGATGACAACGATGGCAAGCCTCGACTTTTCAATTGCCGGGAAGA
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:5283666-5283685
GTTCAGGCACCATTTTGAAGAAGCGTAATC5283666TGGAGAGATGACAACGATGGCAAGCCTCGACTTTGCAATTGCCGGGAAGA
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:5524256-5524275
GTTCAGGCACCATTTTGAAGAAGCGTAATC5524256TGGAGAGATGACAACGATGGCAAGCCTCGACTTTGCAATTGCCGGAAAGA
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:5673167-5673186
GTTCAGGCACCATTTTGAAGAAGCGTAATC5673167TGGAGAGATGACAACGATGGCAAGCCTCGACTTTGCAATTGCCGGAAAGA
Pyrus communis genome assembly, chromosome: 3.
OY757070.1:542703-542722
GTTCAGGCACCATTTGGAAGAAGCGTAATT542703TGGAGAGATGACAACGATGGCAAGCCTCGACTTTTCAATTGCAGGGAAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCATCGTTGTCATCTCTCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCATCGTTGTCATCTCTCCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.284 | 0.276 | search_plus_done; http://172.18.8.135:50400/match?q=CCATCGTTGTCATCTCTCCA&k=0&no_gap=0&offset=0&limit=50
0.394 | 0.109 | search_minus_done; http://172.18.8.135:50400/match?q=TGGAGAGATGACAACGATGG&k=0&no_gap=0&offset=0&limit=43
0.404 | 0.010 | cgi_end;

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