GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:04:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

CccaBa011-F3TV CccABa Cajanus cajan genomic clone CccaBa011-F3, genomic survey sequence.
FI207606.1:112-134
GTGCCACATGCATGCATTTATGAGTCGAGT112CCATGACATCATTGCATGATAAATGAGTGTGCATGTGATATTGATTGTGTATG
CccaBb056-G17JR CccABb Cajanus cajan genomic clone CccaBb056-G17, genomic survey sequence.
FI264535.1:692-714
GCGCCACATGCATGCATTTATGAGTCGAGT692CCATGACATCATTGCATGATAAATGAGTGTACATGTGATATTGATTGTGTATG
TSA: Cajanus cajan cultivar Asha contig02544.Asha mRNA sequence.
EZ650408.1:162-184
CATACATCATCAATATTACAAATACATTCA162TTTATCATGCAATGATGTCATGGATTCATCT
ICPM1E10 Microsatellite enriched genomic DNA library of pigeonpea Cajanus cajan genomic clone ICPM1E10 5', genomic survey sequence.
FI131384.1:709-731
ATACATAATCAAATATTACATATACACTCA709TTTATCATGCAATGATGTCATGGACACGA
CccaBa019-C15TR CccABa Cajanus cajan genomic clone CccaBa019-C15, genomic survey sequence.
FI190480.1:204-226
CATACATAATCAGTATCACATGGACATTCA204TTTATCATGCAATGATGTCATGGAATCGACTCATAAATGCATGCATGTGGCGC
CccaBa004-C9TR CccABa Cajanus cajan genomic clone CccaBa004-C9, genomic survey sequence.
FI192452.1:225-247
CATACATAATCAGTATCACATGGACATTCA225TTTATCATGCAATGATGTCATGGAATCGACTCATAAATGCATGCATGTGGCGC
CccaBa005-O10TR CccABa Cajanus cajan genomic clone CccaBa005-O10, genomic survey sequence.
FI194322.1:272-294
CATACATAATTAATATCACATATACACTCA272TTTATCATGCAATGATGTCATGGACTCGACTCATAAATGCATGCATGTGGTGC
CccaBa003-O12TR CccABa Cajanus cajan genomic clone CccaBa003-O12, genomic survey sequence.
FI197315.1:382-404
CATACATAATCAATATCACATATACACTCA382TTTATCATGCAATGATGTCATGGACTTGACTCATAAATGCATGCATGTGGTGC
CccaBa032-F15TR CccABa Cajanus cajan genomic clone CccaBa032-F15, genomic survey sequence.
FI201773.1:554-576
CATACACAATCAATATCACATGCACTCTCA554TTTATCATGCAATGATGTCATGGACTCGACTCATAAATGCATGCATGTGGCGC
CccaBa059-K14TR CccABa Cajanus cajan genomic clone CccaBa059-K14, genomic survey sequence.
FI209720.1:628-650
CATACACAATCGATATCACATGTATACTCA628TTTATCATGCAATGATGTCATGGACTCGACTCGTAAATGCATGCATGTGGCGC
CccaBa049-F16TV CccABa Cajanus cajan genomic clone CccaBa049-F16, genomic survey sequence.
FI224357.1:310-332
CATACATCATCAATATTACAAATACATTCA310TTTATCATGCAATGATGTCATGGACTCATCTTATAAATGCATGCATGTGGCGC
CccaBa055-E19TV CccABa Cajanus cajan genomic clone CccaBa055-E19, genomic survey sequence.
FI225625.1:305-327
TATAAATAATCAATATCACATATATACTCA305TTTATCATGCAATGATGTCATGGACTCGACTCATAAATACATGCATATTTGTA
CccaBb003-M3JF CccABb Cajanus cajan genomic clone CccaBb003-M3, genomic survey sequence.
FI246816.1:425-447
CATACACAATTGGTATCACATACACACTTA425TTTATCATGCAATGATGTCATGGACTCGACTCATAAATGCATGCATGTGGCGC
CccaBb041-M21JF CccABb Cajanus cajan genomic clone CccaBb041-M21, genomic survey sequence.
FI254102.1:286-308
CATACATAATCAATATCACATGCACACTCA286TTTATCATGCAATGATGTCATGGACTCGACTCAAATGCATGCATGTGGCGCCA
CccaBb047-E23JR CccABb Cajanus cajan genomic clone CccaBb047-E23, genomic survey sequence.
FI268143.1:100-122
CATACATAATCAATATCACATGCACACTCA100TTTATCATGCAATGATGTCATGGACTCGACTCAATGCATGCATGTGGCGCCAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCATGACATCATTGCATGATAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCATGACATCATTGCATGATAAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.236 | 0.228 | search_plus_done; http://172.18.8.135:50400/match?q=CCATGACATCATTGCATGATAAA&k=0&no_gap=0&offset=0&limit=50
0.788 | 0.552 | search_minus_done; http://172.18.8.135:50400/match?q=TTTATCATGCAATGATGTCATGG&k=0&no_gap=0&offset=0&limit=48
0.797 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).