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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:03:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Populus euphratica EST, clone P0000200001D07F1.
AJ772856.1:172-191
ACCCAAGACACACCCGAGCCGAATATGAGA172CCATGCCAGAATGGAAACTTGATTGCCTGCTCAGAGAGTATGGGTTGCCC
P016A11 Populus petioles cDNA library Populus tremula cDNA 5 prime, mRNA sequence.
BU889050.1:178-197
ACCCAAGACACACCAGAGCCGAATATGAGA178CCATGCCAGAATGGAAACTTGATTGCCTGCTCAGAGAGTATGGGTTGCCC
P030F06 Populus petioles cDNA library Populus tremula cDNA 5 prime, mRNA sequence.
BU890089.1:153-172
ACCCAAGACACACCAGAGCCGAATATGAGA153CCATGCCAGAATGGAAACTTGATTGCCTGCTCAGAGAGTATGGGTAGCCC
P062C05 Populus petioles cDNA library Populus tremula cDNA 5 prime, mRNA sequence.
BU892327.1:178-197
ACCCAAGACACACCAGAGCCGAATATGAGA178CCATGCCAGAATGGAAACTTGATTGCCTGCTCAGAGAGTATGGGTTGCCC
MTU10CS.P10.D08 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA sequence.
CF118865.1:112-131
ACCCAAGACACACCAGAGCCGAATATGAGA112CCATGCCAGAATGGAAACTTGATTGCCTGCTCAGAGAGTATGGGTTGCCC
WS01210.BR_G23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01210_G23 5', mRNA sequence.
DT470717.1:79-98
ACCCAAGACACACCCGAGCCGAATATGAGA79CCATGCCAGAATGGAAACTTGATTGCCTGCTCAGAGAGTATGGGTTGCCC
Populus alba EST, clone L6/F2.
FN393720.1:173-192
ACCCAAGACACACCCGAGCAGAATATGAGA173CCATGCCAGAATGGAAACTTGATTGCCTGCTCAGAGAGTATGGGTTGCCG
Solanum melongena mRNA, clone: LS503L01, 5'end, expressed in ovary at 5d post-anthesis.
FS021876.1:182-201
ACCCAAGATACACACGAGCTGAATATGAAG182CCATGCCAGAATGGAAACTTGATTGTTTGCTTACTCAATATGGACTTCCT
Solanum melongena mRNA, clone: SHT02K01, 5'end, expressed in shoot at 7d after germination.
FS064111.1:182-201
ACCCAAGATACACACGAGCTGAATATGAAG182CCATGCCAGAATGGAAACTTGATTGTTTGCTTACTCAATATGGACTTCCT
Solanum melongena mRNA, clone: SHT04L02, 5'end, expressed in shoot at 7d after germination.
FS065280.1:182-201
ACCCAAGATACACACGAGCTGAATATGAAG182CCATGCCAGAATGGAAACTTGATTGTTTGCTTACTCAATATGGACTTCCT
Solanum melongena mRNA, clone: SHT06N16, 5'end, expressed in shoot at 7d after germination.
FS066451.1:182-201
ACCCAAGATACACACGAGCTGAATATGAAG182CCATGCCAGAATGGAAACTTGATTGTTTGCTTACTCAATATGGACTTCCT
Sarcophilus harrisii genome assembly, chromosome: 2.
LR735555.1:128796371-128796390
ATTATTTTAGACACCATCATTGCCCTCATG128796371AAGTTTCCATTCTGGCATGGCAATAAAACACAAACGAAAAAATCCTTCTT
Apteryx australis mantelli genome assembly, scaffold: scaffold100.
LK391417.1:6819356-6819375
AGGGAAAAAAACATGTAGGTTGCCTTCAAG6819356AAGTTTCCATTCTGGCATGGTGCAGAGTATTACAAAGAAGCAATGTGACC
MTU7CL.P7.D05 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA sequence.
CA924575.1:201-220
GGGCAACCCATACTCTCTGAGCAGGCAATC201AAGTTTCCATTCTGGCATGGTCTCATATTCGGCTCTGGTGTGTCTTGGGT
MTU2CA.P13.B06 Aspen apex cDNA Library Populus tremuloides cDNA, mRNA sequence.
CA929394.1:201-220
GGGCAACCCATACTCTCTGAGCAGGCAATC201AAGTTTCCATTCTGGCATGGTCTCATATTCGGCTCTGGTGTGTCTTGGGT
MTU5CS.P2.F08 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA sequence.
CA933039.1:201-220
GGGCAACCCATACTCTCTGAGCAGGCAATC201AAGTTTCCATTCTGGCATGGTCTCATATTCGGCTCTGGTGTGTCTTGGGT
MTU10CS.P16.C10 Aspen stem cDNA Library Populus tremuloides cDNA, mRNA sequence.
CF119319.1:201-220
GGGCAACCCATACTCTCTGAGCAGGCAATC201AAGTTTCCATTCTGGCATGGTCTCATATTCGGCTCTGGTGTGTCTTGGGT
Populus nigra mRNA, clone: PnFL2-008_O06, 3'end.
DB894518.1:327-346
GGGCAACCCATACTCTCTGAGCAGGCAATC327AAGTTTCCATTCTGGCATGGTCTCATATTCGGCTCGGGTGTGTCTTGGGT
Solanum melongena mRNA, clone: LS503L01, 3'end, expressed in ovary at 5d post-anthesis.
FS021877.1:286-305
AGGAAGTCCATATTGAGTAAGCAAACAATC286AAGTTTCCATTCTGGCATGGCTTCATATTCAGCTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCATGCCAGAATGGAAACTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCATGCCAGAATGGAAACTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.907 | 0.899 | search_plus_done; http://172.18.8.135:50400/match?q=CCATGCCAGAATGGAAACTT&k=0&no_gap=0&offset=0&limit=50
1.227 | 0.319 | search_minus_done; http://172.18.8.135:50400/match?q=AAGTTTCCATTCTGGCATGG&k=0&no_gap=0&offset=0&limit=39
1.232 | 0.005 | cgi_end;

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