GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 18:16:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Danio kyathit genome assembly, chromosome: 5.
LR812523.1:51575261-51575277
CCATACAGTACACCGCATTCGTGTACAGTG51575261CCATTACCCGAGTCACGGTTATATGTCAGCTTTTCTGGCATACACAC
[Candida] hispaniensis strain CBS 9996 genome assembly, chromosome: A.
LS992270.1:895305-895321
GGTCCCTGAAGGGTCCCCAAACATGTAATT895305CCATTACCCGAGTCACGTGCTCCTTGAAAATTTGTTGGAGTTTGAAT
Avena insularis genome assembly, chromosome: 7D.
OU342351.1:466825551-466825567
TGATTCCGCCCCCACCCCACCGGAAAAGAA466825551CCATTACCCGAGTCACGTTCTAGCGATCGTTCCACCCCTGATCCCAT
Avena sativa genome assembly, chromosome: 7D.
OU342398.1:445011453-445011469
TGATTCCGCCCCCACCCCACCGGAAAAGAA445011453CCATTACCCGAGTCACGTTCTAGCGATCGTTCCACCCCTGATCCCAT
Avena sativa genome assembly, chromosome: 21.
OV702299.1:453832594-453832610
TGATTCCGCCCCCACCCCACCGGAAAAGAA453832594CCATTACCCGAGTCACGTTCTAGCGATCGTTCCACCCCTGATCCCAT
Avena sativa genome assembly, chromosome: 21.
OV702299.1:481817377-481817393
TGATTCCGCCCCCACCCCACCGGAAAAGAA481817377CCATTACCCGAGTCACGTTCTAGCGATCGTTCCACCCCTGATCCCAT
Shewanella sp. MR-4, complete genome.
CP000446.1:2797465-2797481
ACTACGCCGCCACAAATGTTGCTGACTCAC2797465CCATTACCCGAGTCACGGATCTCCGAAGCGCGCGATCGCGCCCACCA
Shewanella decolorationis strain Ni1-3 chromosome, complete genome.
CP031775.3:3106404-3106420
ACTACGCCACCACAAATGTTGCTGACTCAC3106404CCATTACCCGAGTCACGGATCTCCGAGGCGCGGGATCGCGCCCACCA
Shewanella decolorationis strain sesselensis chromosome.
CP037898.1:4443477-4443493
ACTACGCCACCACAAATGTTGCTGACTCAC4443477CCATTACCCGAGTCACGGATCTCCGAGGCGCGGGATCGCGCCCACCA
Shewanella donghaensis strain LT17 chromosome, complete genome.
CP041783.1:1014544-1014560
ACTACACCACCACAAATGTTACTGACTCAC1014544CCATTACCCGAGTCACGTATTACCGATGCGCGAAACAGGGCAACACA
Shewanella seohaensis strain KCTC 23556 chromosome, complete genome.
CP104900.1:3360384-3360400
ACTACGCCGCCACAAATGTTGCTGACTCAC3360384CCATTACCCGAGTCACGGATCTCCGAAGCGCGCGATCGCGCTCACCA
Colwelliaceae bacterium SQ149 chromosome, complete genome.
CP134145.1:2777209-2777225
TCAAAGCCACCTGCAATGTTATTAACTCAT2777209CCATTACCCGAGTCACGCATTACTGACTCTCGTAACCGTGCGCAGTT
Tridacna crocea genome assembly, chromosome: 8.
OX031063.1:3051715-3051731
AGCCCTCTGCTACCATATCAAAGATGAATT3051715CCATTACCCGAGTCACGTTTGAATTGTCATGTGCAAATGTTTTTGAT
Oegoconia quadripuncta genome assembly, chromosome: 7.
OX438748.1:33296148-33296164
ATATCAAAAAGTCACTAAGAGTATGGAATA33296148CCATTACCCGAGTCACGATTCGCACCGTACTGGTTTTAGTACAAGGA
Bimastos eiseni genome assembly, chromosome: 7.
OY365812.1:21386076-21386092
AATGTTCACCATAAACCTGATTCATTCAAT21386076CCATTACCCGAGTCACGTATGCAGCGACTTGCCGTCAACATCGACGG
Bimastos eiseni genome assembly, chromosome: 7.
OY365812.1:25638915-25638931
CAGAATGCTCACCATAAACCTTATTCAAAT25638915CCATTACCCGAGTCACGTATAATCAGCGATTTGCCGTCAACATCGAT
Amblyjoppa proteus genome assembly, chromosome: 3.
OY998230.1:2360391-2360407
GCGATCGAAAAATCACTACTGGTATTGTAT2360391CCATTACCCGAGTCACGAAACAATAGATGGGGAACTGCTTTTCTACC
Shewanella sp. ANA-3 chromosome 1, complete sequence.
CP000469.1:1940732-1940748
TGGTGGGCGCGATCCCGCGCCTCGGAGATC1940732CGTGACTCGGGTAATGGGTGAGTCAGCAACATTTGCGGCGGCGTGGT
Shewanella sp. FJAT-51649 chromosome, complete genome.
CP080411.1:1910566-1910582
TGGTGGGCGCGATCGCGCGCCTCGGAGATC1910566CGTGACTCGGGTAATGGGTGAGTCAGCAACATTTGTGGTGGCGTGGT
Shewanella mangrovisoli strain FJAT-51754 chromosome, complete genome.
CP080412.1:1927640-1927656
TGGTGGGCGCGATCCCGCGCCTCGGAGATG1927640CGTGACTCGGGTAATGGGTGAGTCAGCAACATTTGTGGTGGCGTGGT
Shewanella putrefaciens strain NCTC12093 genome assembly, chromosome: 1.
LR134303.1:4142326-4142342
TGGTGGGCGCGATCGCGCGCTTCGGAGATC4142326CGTGACTCGGGTAATGGGTGAGTCAGCAACATTTGTGGCGGCGTAGT
Hermetia illucens genome assembly, chromosome: 4.
LR899012.1:100535228-100535244
TTTTGTGCAGTTGTGGCTTCCACCAGATAA100535228CGTGACTCGGGTAATGGAAGAGCCTCTACAAAGCAATATAGTAAATT
Athalia rosae genome assembly, chromosome: 7.
OU795006.1:13294249-13294265
CAGGATATCCCAGACCGAATCCACCCCCAC13294249CGTGACTCGGGTAATGGTGGTGTCCACCGTACGGTTTTTCGTAAATC
Aporrectodea icterica genome assembly, chromosome: 15.
OY744616.1:21764670-21764686
CACACGTTTCCTGACAACGAGGCAGCGTCA21764670CGTGACTCGGGTAATGGCGGATGAAGTGGAGAACGAAGACTGTGGTA
Xanthostigma xanthostigma genome assembly, chromosome: 2.
OY754465.1:21914840-21914856
AATAAAGAAAATAAAAAAAAATACTGATAT21914840CGTGACTCGGGTAATGGCTACTTTTACAGATGACATTTGCTATTCGT
Amblyjoppa fuscipennis genome assembly, chromosome: 2.
OY754489.1:39464169-39464185
GGTAGAAAAGCAGTTCCCCATCTATTGTTT39464169CGTGACTCGGGTAATGGATACAATACCAGTAGTGATTTTTCAATCGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCATTACCCGAGTCACG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCATTACCCGAGTCACG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.159 | 0.150 | search_plus_done; http://172.18.8.135:50400/match?q=CCATTACCCGAGTCACG&k=0&no_gap=0&offset=0&limit=50
0.283 | 0.124 | search_minus_done; http://172.18.8.135:50400/match?q=CGTGACTCGGGTAATGG&k=0&no_gap=0&offset=0&limit=33
0.289 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).