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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-08 10:21:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Lotus japonicus genomic DNA, chromosome 6, clone: LjT14O07, TM0013.
AP004481.1:14080-14104
ACAATAATGGTACTGTACGTGTGTTTATAT14080CCATTATCATTATCATTATCATATCATTATCATTATCCAAAAGAAATCATAATTT
Lotus japonicus B-129 DNA, chromosome 6, complete sequence.
AP022634.1:52508161-52508185
ACAATAATGGTACTGTACGTGTGTTTATAT52508161CCATTATCATTATCATTATCATATCATTATCATTATCCAAAAGAAATCATAATTT
Logfia minima genome assembly, chromosome: 11.
OY992773.1:28934339-28934363
ATATGAATGTAGTTTTATGGCTTATAAGCC28934339CCATTATCATTATCATTATCATATCATGTTGATAACCGATTAAAAAATATTATTC
Phaedon cochleariae genome assembly, chromosome: 16.
OU896722.1:14186414-14186438
CATTATCATTATCATTATCATTATCATTAT14186414CCATTATCATTATCATTATCATATCATTATCATTATCATTATCATTATCATTATC
Eupeodes latifasciatus genome assembly, chromosome: 1.
OV049924.1:244971809-244971833
TTATCATTATCATTATCATCTATCATATAT244971809CCATTATCATTATCATTATCATATCATTATCATTATCATTATCATTATCATTATC
Rhaphigaster nebulosa genome assembly, chromosome: 6.
OX411312.1:87609278-87609302
GGTTAACCATTAGATGATATTGGTCGGTAA87609278CCATTATCATTATCATTATCATATCATCGGTATCATTATCATTATCATACCATCG
Alisma plantago-aquatica genome assembly, chromosome: 2.
OY856410.1:177068580-177068604
TTTTCGCCCATGTAGGCTTCAGTAGTTGAC177068580GATATGATAATGATAATGATAATGGACACATCTATTTTATGTTGGGATCGCAGAT
Thymelicus lineola genome assembly, chromosome: 11.
OZ010691.1:10136048-10136072
CCCACAGAGAAATAATAATGATAATGGTAT10136048GATATGATAATGATAATGATAATGGTGATAATGGTATTAATTAACTATTAATATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCATTATCATTATCATTATCATATC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCATTATCATTATCATTATCATATC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.246 | 0.238 | search_plus_done; http://172.18.8.135:50400/match?q=CCATTATCATTATCATTATCATATC&k=0&no_gap=0&offset=0&limit=50
0.390 | 0.143 | search_minus_done; http://172.18.8.135:50400/match?q=GATATGATAATGATAATGATAATGG&k=0&no_gap=0&offset=0&limit=44
0.391 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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