GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 08:37:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mdfrt3031c07.y1 Mdfrt Malus domestica cDNA clone Mdfrt3031c07 5' similar to TR:Q9ZR77 Q9ZR77 DISEASE RESISTANCE PROTEIN HOMOLOG, mRNA sequence.
CO417528.1:479-503
AGCAGTACAAGTCATTGTGATTAAAGATCG479CCATTGTTATACATGTCGAAAGATGATCATTTTGTAAAACCTTCTG
Mdfrt3034c13.y1 Mdfrt Malus domestica cDNA clone Mdfrt3034c13 5' similar to TR:Q9ZR77 Q9ZR77 DISEASE RESISTANCE PROTEIN HOMOLOG, mRNA sequence.
CO418557.1:479-503
AGCAGTACAAGTCATTGTGATTAAAGATCG479CCATTGTTATACATGTCGAAAGATGATCATTTTGTAAAACCTTCTGTATGAATAT
Mdfrt3040m12.y3 Mdfrt Malus domestica cDNA clone Mdfrt3040m12 5' similar to TR:Q9ZR77 Q9ZR77 DISEASE RESISTANCE PROTEIN HOMOLOG, mRNA sequence.
CO868197.1:350-374
AGCAGTACAAGTCATTGTGATTAAAGATCG350CCATTGTTATACATGTCGAAAGATGATCATTTTGTAAAACCTTCTGTATGAATAT
Malus hybrid cultivar cultivar Flame chromosome 7.
CP141933.1:5145360-5145384
AGCTGTACAAGTCATTGTGATTAAAGATCG5145360CCATTGTTATACATGTCGAAAGATGATCATTTTGTAAAACCTTCTGTATGAATAT
030108ABMA005663HT (ABMA) M9 phloem Malus domestica cDNA clone ABMA005663, mRNA sequence.
CN913694.1:92-116
ATATTCATACAGAAGGTTTTACAAAATGAT92CATCTTTCGACATGTATAACAATGGCGATCTTTAATCACAATGACTTGTACAGCT
Mdfw2005B08_e13659.g1 Mdfw Malus domestica cDNA 5' similar to gb|AAN73007.1| NBS-LRR resistance protein RS6-8 [Helianthus annuus], mRNA sequence.
GO567951.1:79-103
ATATTCATACAGAAGGTTTTACAAAATGAT79CATCTTTCGACATGTATAACAATGGCGATCTTTAATCACAATGACTTGTACTGCT
Malus hybrid cultivar cultivar Royalty chromosome 7.
CP141976.1:30937905-30937929
ATATTCATACAGAAGGTTTTACAAAATGAT30937905CATCTTTCGACATGTATAACAATGGCGATCTTTAATCACAATGACTTGTACAGCT
Malus domestica genome assembly, chromosome: 7.
OU696683.1:30233341-30233365
ATATTCATACAGAAGGTTTTACAAAATGAT30233341CATCTTTCGACATGTATAACAATGGCGATCTTTAATCACAATGACTTGTACAGCT
Malus domestica genome assembly, chromosome: 7.
OU744959.1:30525219-30525243
ATATTCATACAGAAGGTTTTACAAAATGAT30525219CATCTTTCGACATGTATAACAATGGCGATCTTTAATCACAATGACTTGTACAGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCATTGTTATACATGTCGAAAGATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCATTGTTATACATGTCGAAAGATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.211 | 0.202 | search_plus_done; http://172.18.8.135:50400/match?q=CCATTGTTATACATGTCGAAAGATG&k=0&no_gap=0&offset=0&limit=50
0.361 | 0.150 | search_minus_done; http://172.18.8.135:50400/match?q=CATCTTTCGACATGTATAACAATGG&k=0&no_gap=0&offset=0&limit=46
0.364 | 0.004 | cgi_end;

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