GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 22:01:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117O12, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189620.3:114167-114186
TGCAAATTATTTTTAAATATGTTATTTGAT114167CCCAACAATCCCAGAAACACAGTTCTTCAAATCGAAGTGATTTTAATATT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001F19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189625.2:14600-14619
TGCAAATTATTTTTAAATATGTTATTTGAT14600CCCAACAATCCCAGAAACACAGTTCTTCAAATCGAAGTGATTTTAATATT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:59263797-59263816
AAATATGTGGTTTTTAATATGTTATTTGAT59263797CCCAACAATCCCAGAAACACAGTTCTTCAAATCGAAGTGATTTTAATATT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:43126016-43126035
AAATATGTGGTTTTTAATATGTTATTTGAT43126016CCCAACAATCCCAGAAACACAGTTCTTCAAATCGAAGTGATTTTAATATT
Brassica rapa genome, scaffold: A09.
LR031568.1:47442234-47442253
AAATATGTGGTTTTTAATATGTTATTTGAT47442234CCCAACAATCCCAGAAACACAGTTCTTCAAATCGAAGTGATTTTAATATT
Aegilops longissima genome assembly, chromosome: 2S.
LR881070.1:761719783-761719802
AGCAAACACATTAGCCCCTTAGTTGTTTTA761719783CCCAACAATCCCAGAAACACTCAAGGGGCACTAGATTGCACGTAGAAATT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:57908849-57908868
AAATATGTGGTTTTTAATATGTTATTTGAT57908849CCCAACAATCCCAGAAACACAGTTCTTCAAATCGAAGTGATTTTAATATT
Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH004A06, complete sequence.
AC172870.1:40530-40549
AATATTAAAATCACTTCGATTTGAAGAACT40530GTGTTTCTGGGATTGTTGGGATCAAATAACATATTTAAAAATAATTTGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCCAACAATCCCAGAAACAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCAACAATCCCAGAAACAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.123 | 0.114 | search_plus_done; http://172.18.8.135:50400/match?q=CCCAACAATCCCAGAAACAC&k=0&no_gap=0&offset=0&limit=50
0.158 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=GTGTTTCTGGGATTGTTGGG&k=0&no_gap=0&offset=0&limit=43
0.158 | 0.001 | cgi_end;

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