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2025-04-06 06:43:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE01a002O24_SP6.
AM057057.1:102-121

TGTATTCGAGATCAAATAACTTAACAATCT102CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a013J08_SP6.
AM386929.1:71-90

TGTATTCGAGATCAAATAACTTAACAATCT71CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

EL3937R Brassica embryo library (EL) Brassica napus cDNA clone EL3937 5', mRNA sequence.
CN830105.1:93-112

TGTATTCGAGATCAAATAACTTAACAATCT93CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

KBrAE005L09c A leaf cDNA library of Chinese Cabbage, Brassica rapa Brassica rapa subsp. pekinensis cDNA clone KBrAE005L09, mRNA sequence.
CO750279.1:20-39

TCAAATAACTTAACAATCT20CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC

20-E011255-021-008-H05-T7R ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022H058Q, mRNA sequence.
CX194543.1:62-81

AGGTTGCGGGATCAAATAACTTAACAATCT62CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

64ETCOT5_T3_015_C03_30JAN2005_027 Brassica napus mature seed Normalized library at CoT 5 Brassica napus cDNA 5', mRNA sequence.
EE438409.1:43-62

GTAGTTCGAGATCAAATAACTTAACAATCT43CCCAACACAGAACACAAGACGCCCGAAAGAAAAGCAAACTGGTAGACAAT

BNHA_T7_007_D06_06JUN2003_021 Brassica napus - BNHA Brassica napus cDNA 5', mRNA sequence.
EE548411.1:113-132

TGTATTCGAGATCAAATAACTTAACAATCT113CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

BNQA_RP_003_H11_28AUG2003_081 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE548724.1:79-98

TGTATTCGAGATCAAATAACTTAACAATCT79CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

OL7617F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL7617, mRNA sequence.
EH426417.1:32-51

TGTATTCGAGATCAAATAACTTAACAATCT32CCCAACACAGAACACAAGACGCAAGAGAGAGAAGCAAACTGGTAGACAAT

OL9151F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL9151, mRNA sequence.
EH429491.1:26-45

TCGAGATCAAATAATTTAACAATCT26CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

OL9228F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL9228, mRNA sequence.
EH429608.1:28-47

ATTCGAGATCAAATCACTTAACAATCT28CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

65JKBNM0_T3_005_F10_16MAR2005_070 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587108.1:42-61

TGTATTCGAGATCAAATAACTTAACAATCT42CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

65JKBNMO_UP_049_E02_17JUL2006_008 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL590825.1:41-60

TGTATTCCAGATCAAATAACTTAACAATCT41CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

65JKBNMO_UP_058_G02_17JUL2006_004 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL591557.1:51-70

TGTATTCGAGATCAAATAACTTAACAATCT51CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

0187401 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV091158.1:154-173

GGTATTCGAGATCAAATAACTTAACAATCT154CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

0190831 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV093136.1:166-185

TGTATTCGAGATCAAATAACTTAACAATCT166CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

0193891 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV095890.1:34-53

CGTGGTTCACAGACAAAAACTTAACAATCT34CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

0180649 Brassica napus Leaf library Brassica napus cDNA, mRNA sequence.
EV100237.1:155-174

TGTATTCGAGATCAAATAACTTAACAATCT155CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

0126080 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV120768.1:62-81

TGTATTCGAGATCAAATAACTTAACAATCT62CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

0127018 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV121706.1:84-103

TGTATTCGAGATCAAATAACTTAACAATCT84CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

0129427 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV124115.1:78-97

TGTATTCGAGATCAAATAACTTAACAATCT78CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

0129483 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV124171.1:77-96

TGTATTCGAGATCAAATAACTTAACAATCT77CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

0198341 Brassica napus Stem library Brassica napus cDNA, mRNA sequence.
EV128833.1:29-48

CGTTGATTCAGATCAATACTTACAATCT29CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

0170222 Brassica napus Flower Brassica napus cDNA, mRNA sequence.
EV135096.1:71-90

TGTATTCGAGATCAAATAACTTAACAATCT71CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

0077274 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV153414.1:119-138

TGAACTCGAGATCAAATAACTTAACAATCT119CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

0077356 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV153496.1:125-144

TGTATTCGAGATCAAATAACTTAACAATCT125CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

0080531 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV156669.1:97-116

TGTATTCGAGATCAAATAACTTAACAATCT97CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

0080852 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV156990.1:137-156

TGTATTCGAGATCAAATAACTTAACAATCT137CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

0081060 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV157198.1:78-97

TGTATTCGAGATCAAATAACTTAACAATCT78CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

0146552 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV168838.1:128-147

TGCCTCGGACAGCAAGTACCTTAACAATCT128CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

0150477 Brassica napus Etiolated seedlings (pSPORT1) Brassica napus cDNA, mRNA sequence.
EV179669.1:65-84

TGTATTCGAGATCAAATAACTTAACAATCT65CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

0086862 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV189381.1:61-80

TTGTATTCGAGATCAATAACTTAACAATCT61CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

0134534 Brassica napus Root - drought Brassica napus cDNA, mRNA sequence.
EV219426.1:30-49

CGTAGATTCGAGATCAATACTTAACATCT30CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

BR068812 primary inflorescence cDNA library KBST Brassica rapa subsp. pekinensis cDNA clone KBST-01G12 5', mRNA sequence.
EX084168.1:29-48

TATTCGAGATCAAATAACTTAACAATCT29CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC

BR069999 primary inflorescence cDNA library KBST Brassica rapa subsp. pekinensis cDNA clone KBST-20A07 5', mRNA sequence.
EX085355.1:31-50

TGTATTCGAGATCAAATAACTTAACAATCT31CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC

BR124461 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-31C01 5', mRNA sequence.
EX140631.1:169-188

TGTATTCGAGATCAAATAACTTAACAATCT169CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC

BR125674 primary leaf cDNA library KLPS Brassica rapa subsp. pekinensis cDNA clone KLPS-48F02 5', mRNA sequence.
EX141844.1:46-65

TGTATTCGAGATCAAATAACTTAACAATCT46CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC

1106121094143 Cryptosporidium muris (strain RN66) cDNA library, stage oocyst Cryptosporidium muris RN66 cDNA clone 1061038769506, mRNA sequence.
FD389073.1:36-55

TTTGTTTCGAGATCAATAACTTAACAATCT36CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

Brassica rapa subsp. pekinensis mRNA, clone:BBRAF05L14, 3'-end sequence.
FY070022.1:16-35

ATAACTTAACAATCT16CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

Brassica rapa subsp. pekinensis mRNA, clone:BBRAF08N22, 3'-end sequence.
FY071130.1:17-36

AATAACTTAACAATCT17CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

Brassica rapa subsp. pekinensis mRNA, clone: BBRAF43J07, 3'-end sequence.
FY427560.1:15-34

TAACTTAACAATCT15CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

0247470 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO931404.1:42-61

TGGTATTCGAGATCAAGAACTTAACTATCT42CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC

0273762 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO937977.1:37-56

GGTGTGTCGAGATCAATAATTAATCATCTG37CCCAACACAGAACACAAGACGCTGATAGAAAAAAAGCAAACTGGTAGACA

0243855 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO943062.1:209-228

TGTATTCGAGATCAAATAACTTAACAATCT209CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC

odf64e06.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH939482.1:347-366

TGTATTCGAGATCAAATAACTTAACAATCT347CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGCAGACAAT

KBrH094D05R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH094D05, genomic survey sequence.
DU120331.1:821-840

TGTATTCGAGATCAAATAACTTAACAATCT821CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAAGCAAACTGGTAGAC

BOT01-74D3TF BOT01 Brassica oleracea genomic clone BOT01-74D3, genomic survey sequence.
FI729695.1:103-122

TGTATTCGAGATCAAATAACTTAACAATCT103CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGCAGACAAT

Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:18419909-18419928

TGTATTCGAGATCAAATAACTTAACAATCT18419909CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

Brassica napus genome assembly, chromosome: A03.
HG994357.1:18343948-18343967

TGTATTCGAGATCAAATAACTTAACAATCT18343948CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

Brassica napus genome assembly, chromosome: C03.
HG994367.1:29034537-29034556

TGTATTCGAGATCAAATAACTTAACAATCT29034537CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

Brassica rapa genome, scaffold: A03.
LR031572.1:18050345-18050364

TGTATTCGAGATCAAATAACTTAACAATCT18050345CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:29009116-29009135

TGTATTCGAGATCAAATAACTTAACAATCT29009116CCCAACACAGAACACAAGACGCAAGAAAGAAAAGCAAACTGGTAGACAAT

Digitaria exilis genome assembly, chromosome: 4A.
LR994610.1:8658877-8658896

ACGCTCACAATTCACATGCATCACATACTA8658877CCCAACACAGAACACAAGACCCTTACAAACGTGCATGGATGTCTTAAACC

Digitaria exilis genome assembly, chromosome: 4B.
LR994611.1:8470775-8470794

ACGCTCACAATTCACATGCATCACATACTA8470775CCCAACACAGAACACAAGACCCTTACAAACGTGCATGGATGTCTTAAACC

Brassica rapa genome assembly, chromosome: A03.
LS974619.2:18177208-18177227

TGTATTCGAGATCAAATAACTTAACAATCT18177208CCCAACACAGAACACAAGACGCAAGAAAGAAAAAAGCAAACTGGTAGACA

Data Export:

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Debug Info:

0.008 | 0.008 | search_start;
2.991 | 2.983 | search_plus_done; http://172.18.8.135:50400/match?q=CCCAACACAGAACACAAGAC&k=0&no_gap=0&offset=0&limit=50
3.059 | 0.068 | search_minus_done; http://172.18.8.135:50400/match?q=GTCTTGTGTTCTGTGTTGGG&k=0&no_gap=0&offset=0&limit=0
3.060 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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