GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 11:39:18, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Vitis vinifera contig VV78X147810.38, whole genome shotgun sequence.
AM485766.2:1328-1349
AATGACAGAATAAATTAAACACATTATGAT1328CCCACCTTGCCCTTAGATGTTATGCTTGAGAGGGCATATTGTCCACCTGACG
VVS4 Grapevine (M. Thomas) Vitis vinifera STS genomic, sequence tagged site.
G64024.1:153-174
CGTCAGGTGGACAATATGCCCTCTCAAGCA153TAACATCTAAGGGCAAGGTGGG
Vitis vinifera cultivar Black Monukka isolate seedless chromosome 08.
CP140992.1:12626456-12626477
CGTCAGGTGGACAATATGCCCTCTCAAGCA12626456TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis vinifera cultivar Black Monukka isolate seedless chromosome 08.
CP141011.1:12510502-12510523
CGTCAGGTGGACAATATGCCCTCTCAAGCA12510502TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis vinifera cultivar Thompson Seedless isolate seedless chromosome 08.
CP142472.2:12278576-12278597
CGTCAGGTGGACAATATGCCCTCTCAAGCA12278576TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis vinifera cultivar Thompson Seedless isolate seedless chromosome 08.
CP142491.2:12519365-12519386
CGTCAGGTGGACAATATGCCCTCTCAAGCA12519365TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis vinifera x Vitis labrusca cultivar Shine Muscat chromosome 08.
CP161581.1:11009745-11009766
CGTCAGGTGGACAATATGCCCTCTCAAGCA11009745TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis vinifera x Vitis labrusca cultivar Shine Muscat chromosome 08.
CP161600.1:12381826-12381847
CGTCAGGTGGACAATATGCCCTCTCAAGCA12381826TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis vinifera cultivar Pinot Noir chromosome 08.
CP161638.1:12410526-12410547
CGTCAGGTGGACAATATGCCCTCTCAAGCA12410526TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis vinifera cultivar Muscat Hamburg chromosome 08.
CP161657.1:11161376-11161397
CGTCAGGTGGACAATATGCCCTCTCAAGCA11161376TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis vinifera cultivar Muscat Hamburg chromosome 08.
CP161676.1:10951346-10951367
CGTCAGGTGGACAATATGCCCTCTCAAGCA10951346TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis vinifera cultivar Manicure Finger chromosome 08.
CP161695.1:12628287-12628308
CGTCAGGTGGACAATATGCCCTCTCAAGCA12628287TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis vinifera cultivar Manicure Finger chromosome 08.
CP161714.1:12638058-12638079
CGTCAGGTGGACAATATGCCCTCTCAAGCA12638058TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis vinifera cultivar Hongmunage chromosome 08.
CP161752.1:12911852-12911873
CGTCAGGTGGACAATATGCCCTCTCAAGCA12911852TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis vinifera cultivar Baimunage chromosome 08.
CP161771.1:12828318-12828339
CGTCAGGTGGACAATATGCCCTCTCAAGCA12828318TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis vinifera genome assembly, chromosome: 08.
OZ210985.1:12256689-12256710
CGTCAGGTGGACAATATGCCCTCTCAAGCA12256689TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis pseudoreticulata genome assembly, chromosome: 08.
OZ211428.1:12460362-12460383
CGTCAGGTGGACAATATGCCCTCTCAAGCA12460362TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis vinifera genome assembly, chromosome: 08.
OZ211466.1:11999249-11999270
CGTCAGGTGGACAATATGCCCTCTCAAGCA11999249TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis pseudoreticulata genome assembly, chromosome: 08.
OZ211505.1:11256150-11256171
CGTCAGGTGGACAATATGCCCTCTCAAGCA11256150TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis cinerea var. helleri x Vitis vinifera genome assembly, chromosome: 08.
OZ211543.1:11185119-11185140
CGTCAGGTGGACAATATGCCCTCTCAAGCA11185119TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT
Vitis cinerea var. helleri x Vitis riparia genome assembly, chromosome: 08.
OZ211651.1:12967097-12967118
CGTCAGGTGGACAATATGCCCTCTCAAGCA12967097TAACATCTAAGGGCAAGGTGGGATCATAATGTGTTTAATTTATTCTGTCATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCCACCTTGCCCTTAGATGTTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCACCTTGCCCTTAGATGTTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.227 | 0.218 | search_plus_done; http://172.18.8.135:50800/match?q=CCCACCTTGCCCTTAGATGTTA&k=0&no_gap=0&offset=0&limit=50
0.330 | 0.102 | search_minus_done; http://172.18.8.135:50800/match?q=TAACATCTAAGGGCAAGGTGGG&k=0&no_gap=0&offset=0&limit=49
0.344 | 0.014 | cgi_end;

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