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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-24 21:38:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Cyprinus carpio genome assembly, scaffold: LG30, chromosome: 30.
LN590707.1:3824557-3824576
GTGTGGAGCTCTTTGATGTGAACACACACA3824557CCCACTCTTGGAATGGAAAAGCTCTCTTTCTCTCTGTACTAATGTCTCTG
Barbus barbus genome assembly, chromosome: 31.
OW387198.1:21847299-21847318
GTGAAGAGCTCTTTGATGTGAACACACACA21847299CCCACTCTTGGAATGGAAAAGATCTCGTTCTCTCAGCACTAATGTCTCTG
Barbus barbus genome assembly, chromosome: 34.
OW387201.1:21071853-21071872
GAAGAGCTTTTTGATGTGAACACATACACA21071853CCCACTCTTGGAATGGAAAAGATTTATTTCTCTCTGCACTAATGTCTCTG
Carassius carassius genome assembly, chromosome: 28.
OY720495.1:21461009-21461028
CAGTGAAGAGCTCTTTGATGTAAACACACA21461009CCCACTCTTGGAATGGAAAAGATCTCTTTCTCTCTGCACTAATGTCTCTG
UCRVU04_CCNI5243_g1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI5243.g1, mRNA sequence.
FG819327.1:209-228
CCTCATATACATTCATACATACATATCCCT209CCCACTCTTGGAATGGAAAAATATTGATTTCAATTGAACCCCTGCGGGGG
UCRVU07_CCNP2320_g1 Cowpea UCR 779 Mixed Tissue and Conditions cDNA Library UCRVU07-1-2 Vigna unguiculata cDNA clone CCNP2320.g1, mRNA sequence.
FG864055.1:87-106
CCTCATATACATTCATACATACATATCCAT87CCCACTCTTGGAATGGAAAAATATTGATTTCAATTGAACCACTGCAGGCT
Vigna angularis mRNA, clone: VES09A15.
HX945493.1:78-97
CCTCATATACATTCATACATACATATCCAT78CCCACTCTTGGAATGGAAAAATATTCATTTCAATTAAACCACTGCAGGCT
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC M040H12, *** SEQUENCING IN PROGRESS ***, 76 unordered pieces.
AC274194.1:151638-151657
CCTCATATACATTCATACATACATATCCAT151638CCCACTCTTGGAATGGAAAAATATTGATTTCAATTGAACCACTGCAGGCT
Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
AP015034.1:8161716-8161735
CCTCATATACATTCATACATACATATCCAT8161716CCCACTCTTGGAATGGAAAAATATTCATTTCAATTAAACCACTGCAGGCT
Sequence 5561 from patent US 10006042.
MI850288.1:1001-1020
AGCCTGCAGTGGTTCAATTGAAATCAATAT1001TTTTCCATTCCAAGAGTGGGATGGATATGTATGTATGAATGTATATGAGG
Sequence 5561 from patent US 10337023.
MO173455.1:1001-1020
AGCCTGCAGTGGTTCAATTGAAATCAATAT1001TTTTCCATTCCAAGAGTGGGATGGATATGTATGTATGAATGTATATGAGG
Sequence 5561 from patent US 10774340.
MV707202.1:1001-1020
AGCCTGCAGTGGTTCAATTGAAATCAATAT1001TTTTCCATTCCAAGAGTGGGATGGATATGTATGTATGAATGTATATGAGG
Sequence 5561 from patent US 11499161.
OO874983.1:1001-1020
AGCCTGCAGTGGTTCAATTGAAATCAATAT1001TTTTCCATTCCAAGAGTGGGATGGATATGTATGTATGAATGTATATGAGG
UCRVU04_CCNI5243_b1 Cowpea 524B Mixed Tissue and Conditions cDNA Library UCRVU04-1-2 Vigna unguiculata cDNA clone CCNI5243.b1, mRNA sequence.
FG819326.1:264-283
AGCCTGCAGTGGTTCAATTGAAATCAATAT264TTTTCCATTCCAAGAGTGGGATGGATATGTATGTATGAATGTATATGAGG
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC M051E20, *** SEQUENCING IN PROGRESS ***, 33 unordered pieces.
AC275212.1:98407-98426
AGCCTGCAGTGGTTCAATTGAAATCAATAT98407TTTTCCATTCCAAGAGTGGGATGGATATGTATGTATGAATGTATATGAGG
Vigna unguiculata cultivar Xiabao 2 chromosome Vu03.
CP039346.1:73808838-73808857
AGCCTGCAGTGGTTCAATTGAAATCAATAT73808838TTTTCCATTCCAAGAGTGGGATGGATATGTATGTATGAATGTATATGAGG
Vigna unguiculata cultivar Xiabao 2 chromosome Vu03.
CP039346.1:73809697-73809716
TAAACTTNGTGGTTCAATTGAAATCAATAT73809697TTTTCCATTCCAAGAGTGGGATGGATATGTATGTATGAATGTATATGAGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCCACTCTTGGAATGGAAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCACTCTTGGAATGGAAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.650 | 0.641 | search_plus_done; http://172.18.8.135:50400/match?q=CCCACTCTTGGAATGGAAAA&k=0&no_gap=0&offset=0&limit=50
1.092 | 0.442 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTCCATTCCAAGAGTGGG&k=0&no_gap=0&offset=0&limit=41
1.098 | 0.005 | cgi_end;

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