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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:35:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sylvilagus floridanus genome assembly, chromosome: 19.
OX463241.1:161280455-161280474
TCAGAGACCTTTAGGGGTTGAGTTGTGTTC161280455CCCAGAAATGATTTGCGAAGTCCTTCTCTCCAGATGGAAGCCTCAGTCCT
Rana temporaria genome assembly, chromosome: 1.
LR991680.1:11490717-11490736
AAGATCACCTCCACATGGTTTCATTACAGA11490717CCCAGAAATGATTTGCGAAGAAGAGAGTTTGCCATATTTTTGGGGTTGTT
Rana temporaria genome assembly, chromosome: 1.
LR991680.1:11537492-11537511
AAGATCACCTCCACATGGTTTCATTACAGA11537492CCCAGAAATGATTTGCGAAGAAGAGAGTTTGCCATATTTTTGGGGTTGTT
Prolixibacteraceae bacterium isolate 9b7732c0-d8cd-41f6-80df-9fd6f85688b2 genome assembly, chromosome: 27.
OY781643.1:1202-1221
AAGGAAACACCGGGAACTTACAGAATTCCT1202CCCAGAAATGATTTGCGAAGTAAATCTGGATGGAAGCCTACGATATGTCA
Solanum melongena mRNA, clone: PED01E17, 3'end, expressed in peduncle at anthesis.
FS033407.1:286-305
AGTGGATCACTATGAGTGTTGGTATCCAAA286CCCAGAAATGATTTGCGAAGATATAGTAAGCGTAGTAATAGAAGGGACTT
Solanum torvum mRNA, clone: TVR12N06, 3'end, expressed in root at vegetative stage, 2 months after germination.
FS111785.1:316-335
AGTGGATCACTATGAGTGTTGGTATCCAAA316CCCAGAAATGATTTGCGAAGATATAGTAAGCGTAGTAATAGAAGGGACTT
TSA: Capsicum annuum MA_MegaContig_10394, mRNA sequence.
JW157297.1:393-412
AGTGAATCACTATGAGAGTTGGTATCCAAA393CCCAGAAATGATTTGCGAAGACATAGTAAGCATAGTAATAGAAGGGGCTT
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:249553486-249553505
AGTGAATCACTATGAGAGTTGGTATCCAAA249553486CCCAGAAATGATTTGCGAAGACATAGTAAGCATAGTAATAGAAGGGGCTT
Solanum melongena mRNA, clone: CHX02C11, 5'end, expressed in ovary at 24h after anthesis.
FS012102.1:339-358
AAGTCCCTTCTATTACTACGCTTACTATAT339CTTCGCAAATCATTTCTGGGTTTGGATACCAACACTCATAGTGATCCACT
TSA: Petunia axillaris PETAX033643:Contig1 mRNA sequence.
JI347092.1:298-317
AAGCCCCTACTACTACTATGCTTACTATGT298CTTCGCAAATCATTTCTGGGTTTGGATACCAACTCTCATAGTGATCCATT
TSA: Petunia integrifolia subsp. inflata PETIN006209:Contig1 mRNA sequence.
JI363483.1:183-202
AAGCCCCTACTACTACTATGCTTACTATGT183CTTCGCAAATCATTTCTGGGTTTGGATACCAACTCTCATAGTGATCCATT
TSA: Capsicum annuum MGMT_Contig20216, mRNA sequence.
JW070460.1:722-741
AAGCCCCTTCTATTACTATGCTTACTATGT722CTTCGCAAATCATTTCTGGGTTTGGATACCAACTCTCATAGTGATTCACT
Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 7.
CP124713.1:1959246-1959265
AAGCCCCTTCTATTACTACGCTTACTATGT1959246CTTCGCAAATCATTTCTGGGTTTGGATACCAACTCTCATAGTGATCCATT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 6.
CP124726.1:3988513-3988532
AAGCCCCTTCTATTACTATGCTTACTATGT3988513CTTCGCAAATCATTTCTGGGTTTGGATACCAACTCTCATAGTGATTCACT
Withania somnifera cultivar NMITLI-101 sterol C-7,8 isomerase (HYD1) mRNA, complete cds.
KX574835.1:558-577
AAGTCCCTTCTATTACTATGCTTATTACGT558CTTCGCAAATCATTTCTGGGTTTGGATACCAACTCTTATAGTGATCCACT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCCAGAAATGATTTGCGAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCAGAAATGATTTGCGAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.357 | 0.348 | search_plus_done; http://172.18.8.135:50400/match?q=CCCAGAAATGATTTGCGAAG&k=0&no_gap=0&offset=0&limit=50
0.583 | 0.225 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCGCAAATCATTTCTGGG&k=0&no_gap=0&offset=0&limit=42
0.588 | 0.005 | cgi_end;

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