GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:32:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH052_00624m, 5' end sequence.
AB450726.1:155-176
AATCATATCCTTATCTGGTTTATCATCCTG155CCCAGCAGCCTCCTAATCAATATATGGTAATTCAATATTCTCCACCACCACC
Pyrus pyrifolia mRNA, clone: NLE2_06_24, 5' end sequence, expressed in leaf.
HX767187.1:155-176
AATCATATCCTTATCTGGTTTATCATCCTG155CCCAGCAGCCTCCTAATCAATATATGGTAATTCAATATTCTCCACCACCACC
TSA: Pyrus pyrifolia mRNA, contig: contig_6550.
FX433746.1:185-206
AATCATATCCTTATCTGGTTTATCATCCTG185CCCAGCAGCCTCCTAATCAATATATGGTAATTCAATATTCTCCACCACCACC
TSA: Pyrus x bretschneideri Unigene34713_XinShao mRNA sequence.
JR627297.1:188-209
AATCATATCCTTATCTGGGTTATCATCCTG188CCCAGCAGCCTCCTAATCAATATATGGTAATTCAATATTCTCCACCACCACC
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141925.1:11715975-11715996
AATCATATCCTTATCTGGGTTATCATCCTG11715975CCCAGCAGCCTCCTAATCAATATATGGTAATTCAATATTCTCCACCACCACC
Malus hybrid cultivar cultivar Flame chromosome 16.
CP141942.1:11744382-11744403
AATCATATCCTTATCTGGGTTATCATCCTG11744382CCCAGCAGCCTCCTAATCAATATATGGTAATTCAATATTGTCCACCTCCTCC
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141968.1:11602212-11602233
AATCATATCCTTATCTGGGTTATCATCCTG11602212CCCAGCAGCCTCCTAATCAATATATGGTAATTCAATATTCTCCACCACCACC
Malus hybrid cultivar cultivar Royalty chromosome 16.
CP141985.1:12204274-12204295
AATCATATCCTTATCTGGGTTATCATCCTG12204274CCCAGCAGCCTCCTAATCAATATATGGTAATTCAATATTGTCCACCTCCTCC
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143373.1:11883045-11883066
AATCATATCCTTATCTGGGTTATCATCCTG11883045CCCAGCAGCCTCCTAATCAATATATGGAAATTCAATATTGTCCACCTCCTCC
Malus hybrid cultivar cultivar SH6 chromosome 16.
CP143390.1:11411115-11411136
AATCATATCCTTATCTGGGTTGTCATCCTG11411115CCCAGCAGCCTCCTAATCAATATATGGTAATTCAATATTCTCCACCTCCTCC
Malus sylvestris genome assembly, chromosome: 16.
OU696518.1:11522202-11522223
AATCATATCCTTATCTGGGTTATCATCCTG11522202CCCAGCAGCCTCCTAATCAATATATGGTAATTCAATATTGTCCACCTCCTCC
Malus domestica genome assembly, chromosome: 16.
OU696692.1:12031521-12031542
AATCATATCCTTATCTGGGTTATCATCCTG12031521CCCAGCAGCCTCCTAATCAATATATGGTAATTCAATATTGTCCACCTCCTCC
Malus domestica genome assembly, chromosome: 16.
OU744557.1:12031149-12031170
AATCATATCCTTATCTGGGTTATCATCCTG12031149CCCAGCAGCCTCCTAATCAATATATGGTAATTCAATATTGTCCACCTCCTCC
Malus x robusta genome assembly, chromosome: 3.
OY720327.1:12307833-12307854
AATCATATCCTTATCTGGGTTATCATCCTG12307833CCCAGCAGCCTCCTAATCAATATATGGAAATTCAATATTGTCCACCTCCTCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCCAGCAGCCTCCTAATCAATA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCAGCAGCCTCCTAATCAATA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.273 | 0.265 | search_plus_done; http://172.18.8.135:50400/match?q=CCCAGCAGCCTCCTAATCAATA&k=0&no_gap=0&offset=0&limit=50
0.383 | 0.110 | search_minus_done; http://172.18.8.135:50400/match?q=TATTGATTAGGAGGCTGCTGGG&k=0&no_gap=0&offset=0&limit=36
0.383 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).