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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 15:11:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Acomys kempi genome assembly, chromosome: 1.
OU015355.1:186603161-186603180
TCTTCCTATGCATTCTGCTAAACTCTATTC186603161CCCAGCATCCCTTGAGTTTACAGCTAATGGACTATGAATACAGGACATTT
Acomys percivali genome assembly, chromosome: 1.
OU015742.1:189934834-189934853
TCTTCCTATGCATTCTGCTAAACTCTATTC189934834CCCAGCATCCCTTGAGTTTACAGCTAATGGACTATGAACACAGGACATTT
Solanum melongena mRNA, clone: AE003P06, 5'end, expressed in ovary at anthesis.
FS001749.1:433-452
TTACTGGTTTCTGTATGAAATGCAATGTTC433CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: AE005E19, 5'end, expressed in ovary at anthesis.
FS002579.1:426-445
TTACTGGTTTCTGTATGAAATGCAATGTTC426CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: CAL03L18, 5'end, expressed in callus at 3d after subculture.
FS009528.1:434-453
TTACTGGTTTCTGTATGAAATGCAATGTTC434CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: CAL04D14, 5'end, expressed in callus at 3d after subculture.
FS009796.1:24-43
TTTCTGTATGAAATGCAATGTTC24CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: CPA01C17, 5'end, expressed in ovary at 24h after anthesis.
FS014763.1:285-304
TTACTGGTTTCTGTATGAAATGCAATGTTC285CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: CPA01O15, 5'end, expressed in ovary at 24h after anthesis.
FS015273.1:427-446
TTACTGGTTTCTGTATGAAATGCAATGTTC427CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: OVS01J03, 5'end, expressed in ovary at 5d pre-anthesis.
FS029863.1:426-445
TTACTGGTTTCTGTATGAAATGCAATGTTC426CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: OVS05H06, 5'end, expressed in ovary at 5d pre-anthesis.
FS032314.1:422-441
TTACTGGTTTCTGTATGAAATGCAATGTTC422CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: PER01G16, 5'end, expressed in pericarp at 10d after anthesis.
FS037855.1:426-445
TTACTGGTTTCTGTATGAAATGCAATGTTC426CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: PLA05J16, 5'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS045572.1:426-445
TTACTGGTTTCTGTATGAAATGCAATGTTC426CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTT
Solanum melongena mRNA, clone: PST02B09, 5'end, expressed in mixture of petal and stamen at anthesis.
FS048441.1:204-223
TTACTGGTTTCTGTATGAAATGCAATGTTC204CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: RBW01H07, 5'end, expressed in root at 3w after germination.
FS049837.1:432-451
TTACTGGTTTCTGTATGAAATGCAATGTTC432CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: RBW02J08, 5'end, expressed in root at 3w after germination.
FS050417.1:434-453
TTACTGGTTTCTGTATGAAATGCAATGTTC434CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: ROL05B09, 5'end, expressed in root at 3w after germination.
FS054962.1:434-453
TTACTGGTTTCTGTATGAAATGCAATGTTC434CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: ROL05G13, 5'end, expressed in root at 3w after germination.
FS055113.1:434-453
TTACTGGTTTCTGTATGAAATGCAATGTTC434CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: SEP01B03, 5'end, expressed in sepal at 10d after anthesis.
FS058184.1:433-452
TTACTGGTTTCTGTATGAAATGCAATGTTC433CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTT
Solanum melongena mRNA, clone: SEP02G08, 5'end, expressed in sepal at 10d after anthesis.
FS059056.1:426-445
TTACTGGTTTCTGTATGAAATGCAATGTTC426CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: SEP07H21, 5'end, expressed in sepal at 10d after anthesis.
FS062266.1:220-239
TTACTGGTTTCTGTATGAAATGCAATGTTC220CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: SHT05L20, 5'end, expressed in shoot at 7d after germination.
FS065864.1:37-56
TTACTGGTTTCTGTATGAAATGCAATGTTC37CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: SmFL09M16, 5'end.
FS072677.1:432-451
TTACTGGTTTCTGTATGAAATGCAATGTTC432CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: SmFL13F12, 5'end.
FS075161.1:438-457
TTACTGGTTTCTGTATGAAATGCAATGTTC438CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: SmFL16A04, 5'end.
FS077058.1:427-446
TTACTGGTTTCTGTATGAAATGCAATGTTC427CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: SmFL30M21, 5'end.
FS087202.1:512-531
TTACTGGTTTCTGTATGAAATGCAATGTTC512CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Solanum melongena mRNA, clone: YFR03O15, 5'end, expressed in fruit at 2w after anthesis.
FS096282.1:404-423
TTACTGGTTTCTGTATGAAATGCAATGTTC404CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Sm50PPL04F06 Library from 50 dpa fruit of eggplant cv. PPL Solanum melongena cDNA, mRNA sequence.
JZ717453.1:434-453
TTACTGGTTTCTGTATGAAATGCAATGTTC434CCCAGCATCCCTTGAGTTTATTCTGGGAGTCTTTTTGTCAAGTTACTGAT
Nostoc cf. commune SO-36 DNA, complete genome.
AP025732.1:5025814-5025833
TTTTGGTGCAGATGTCCCAAAATTATTATT5025814CCCAGCATCCCTTGAGTTTATGCGATGTCTACGATGGTTACTGAGCCAAG
Solanum melongena mRNA, clone: AE004N09, 3'end, expressed in ovary at anthesis.
FS002299.1:212-231
ATCAGTAACTTGACAAAAAGACTCCCAGAA212TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: AE005F22, 3'end, expressed in ovary at anthesis.
FS002622.1:111-130
ATCAGTAACTTGACAAAAAGACTCCCAGAA111TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: CAL03L18, 3'end, expressed in callus at 3d after subculture.
FS009529.1:115-134
ATCAGTAACTTGACAAAAAGACTCCCAGAA115TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: CPA01C17, 3'end, expressed in ovary at 24h after anthesis.
FS014764.1:212-231
ATCAGTAACTTGACAAAAAGACTCCCAGAA212TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: CPA01O15, 3'end, expressed in ovary at 24h after anthesis.
FS015274.1:122-141
ATCAGTAACTTGACAAAAAGACTCCCAGAA122TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: CPA02A11, 3'end, expressed in ovary at 24h after anthesis.
FS015345.1:122-141
ATCAGTAACTTGACAAAAAGACTCCCAGAA122TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: LS002E05, 3'end, expressed in ovary at anthesis.
FS018459.1:212-231
ATCAGTAACTTGACAAAAAGACTCCCAAAA212TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: LS002K11, 3'end, expressed in ovary at anthesis.
FS018706.1:226-245
ATCAGTAACTTGACAAAAAGACTCCCAGAA226TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: LS502I08, 3'end, expressed in ovary at 5d post-anthesis.
FS021142.1:111-130
ACCAGTAACTTGACAAAAAGACTCCCAGAA111TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: OVS01J03, 3'end, expressed in ovary at 5d pre-anthesis.
FS029864.1:122-141
ATCAGTAACTTGACAAAAAGACTCCCAGAA122TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: PED01G08, 3'end, expressed in peduncle at anthesis.
FS033457.1:111-130
ATCAGTAACTTGACAAAAAGACTCCCAGAA111TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: PER06B12, 3'end, expressed in pericarp at 10d after anthesis.
FS040665.1:255-274
ATCAGTAACTTGACAAAAAGACTCCCAGAA255TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: PER07B16, 3'end, expressed in pericarp at 10d after anthesis.
FS041293.1:237-256
ATCAGTAACTTGACAAAAAGACTCCCAAAA237TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAC
Solanum melongena mRNA, clone: PLA01M22, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS043065.1:212-231
ATCAGTAACTTGACAAAAAGACTCCCAGAA212TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: PLA05D11, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS045326.1:214-233
ATCAGTAACTTGACAAAAAGACTCCCAAAA214TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: PLA05J16, 3'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS045573.1:133-152
ATCAGTAACTTGACAAAAAGACTCCCAGAA133TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: RBW01H07, 3'end, expressed in root at 3w after germination.
FS049838.1:212-231
ATCAGTAACTTGACAAAAAGACTCCCAGAA212TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: RBW02J08, 3'end, expressed in root at 3w after germination.
FS050418.1:185-204
ATCAGTAACTTGACAAAAAGACTCCCAGAA185TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: ROL05B09, 3'end, expressed in root at 3w after germination.
FS054963.1:212-231
ATCAGTAACTTGACAAAAAGACTCCCAGAA212TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: ROL05G13, 3'end, expressed in root at 3w after germination.
FS055114.1:74-93
ATCAGTAACTTGACAAAAAGACTCCCAGAA74TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: SEP01B03, 3'end, expressed in sepal at 10d after anthesis.
FS058185.1:215-234
ATCAGTAACTTGACAAAAAGACTCCCAAAA215TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Solanum melongena mRNA, clone: SEP01P15, 3'end, expressed in sepal at 10d after anthesis.
FS058787.1:232-251
ATCAGTAACTTGACAAAAAGACTCCCAGAA232TAAACTCAAGGGATGCTGGGGAACATTGCATTTCATACAGAAACCAGTAA
Nostoc commune HK-02 DNA, nearly complete genome.
AP018326.1:6838126-6838145
AGCCGCTCAGTGACCATCGTAGACATCGCA6838126TAAACTCAAGGGATGCTGGGAATAATAATTTTGGGACATCTGCACCAAAA
Nostoc flagelliforme CCNUN1 chromosome, complete genome.
CP024785.1:603948-603967
AGAGCGTCATAGCCCGTCGTAGACATCGCA603948TAAACTCAAGGGATGCTGGGAATAATAATTTTGGGACATCTGCACCAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCCAGCATCCCTTGAGTTTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCAGCATCCCTTGAGTTTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.237 | 2.228 | search_plus_done; http://172.18.8.135:50400/match?q=CCCAGCATCCCTTGAGTTTA&k=0&no_gap=0&offset=0&limit=50
4.269 | 2.032 | search_minus_done; http://172.18.8.135:50400/match?q=TAAACTCAAGGGATGCTGGG&k=0&no_gap=0&offset=0&limit=22
4.285 | 0.017 | cgi_end;

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