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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 15:21:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Gallus gallus breed Huxu chromosome 1.
CP100555.1:94681017-94681036
CAGACTGCAATTCTGCTGATCATGTGAAGT94681017CCCAGGATTCTCAGCACACACCGCACTCCATGACACCTTCAAATGCTTCA
Apteryx australis mantelli genome assembly, scaffold: scaffold33.
LK064674.1:15313198-15313217
CAGACTGCAATTCTGCTGATCACGTGAAGT15313198CCCAGGATTCTCAGCACACACCACACTCCATGACTCCTTCAAATGCTTCA
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 8.
OU383781.1:47117841-47117860
AAAATTGAACTCAGATTTCCCAAGTCCTAG47117841CCCAGGATTCTCAGCACACATAGACCTATGCTTTGCAAAAGTGGGTGCCT
Meleagris gallopavo genome assembly, chromosome: 1.
OW982252.1:92664547-92664566
CAGACTGCAATTCTGCTGATCATGTGAAGT92664547CCCAGGATTCTCAGCACACACCGCACTCCATGACACCTTCAAATGCTTCA
Meleagris gallopavo genome assembly, chromosome: 1.
OW982291.1:92951626-92951645
CAGACTGCAATTCTGCTGATCATGTGAAGT92951626CCCAGGATTCTCAGCACACACCGCACTCCATGACACCTTCAAATGCTTCA
Nesoenas mayeri genome assembly, chromosome: 1.
OY720056.1:130063810-130063829
CAGACTGCAATTCTGCTGATCATGTGAAGT130063810CCCAGGATTCTCAGCACACACCACACTCCATGACTCCTTCAAATGCTTCA
Phalacrocorax carbo genome assembly, chromosome: 1.
OY997601.1:102037816-102037835
CAGACTGCAATTCTGCTGATCATGTGAAGT102037816CCCAGGATTCTCAGCACACACCACACTCCATGACTCCTTCAAATGCTTCA
603958081F1 CSEQRBN09 Gallus gallus cDNA clone ChEST928b21 5', mRNA sequence.
BU427285.1:177-196
AAGACTGCAATTCTGCTGATCATGTGAAGT177CCCAGGATTCTCAGCACACACCGCACTCCATGACACCTTCAAATGCTTCA
603848387F1 CSEQRBN22 Gallus gallus cDNA clone ChEST840n21 5', mRNA sequence.
BU480192.1:175-194
AAGACTGCAATTCTGCTGATCATGTGAAGT175CCCAGGATTCTCAGCACACACCGCACTCCATGACACCTTCAAATGCTTCA
naw35b07.y1 Chicken eye (hatched). Unnormalized (naw) Gallus gallus cDNA clone naw35b07 5', mRNA sequence.
DR426814.1:499-518
AAGACTGCAATTCTGCTGATCACGTGAAGT499CCCAGGATTCTCAGCACACACCGCACTCCATGACACCTTCAAATGCTTCA
EST11022140 CM-VEa library Cucumis melo cDNA clone VEa0002H07, mRNA sequence.
JG480427.1:447-466
TGCCTTGCGCAATACCTTTGCAAAGTAAAA447CCCAGGATTCTCAGCACACAGCAAAATGGTGAGAAGGCCATGCTCAAAAT
EST002608 Watermelon root Suppression subtractive hybridization (SSH) library Citrullus lanatus cDNA clone SSH0002608, mRNA sequence.
JG704053.1:131-150
CGCCTTGTGCAATAACTTTGCAAAATAAAA131CCCAGGATTCTCAGCACACAGCAAAACTGTTAGAAGGCCATGCTCAAAAT
Cucumis melo genomic scaffold, anchoredscaffold00033.
LN681905.1:1858858-1858877
GTTTAAGAACAATACCTTTGCAAAGTAAAA1858858CCCAGGATTCTCAGCACACAGCAAAATGGTGAGAAGGCCATGCTCAAAAT
Mus musculus molossinus genome assembly, chromosome: 7.
OW971664.1:72661146-72661165
GCTACCCTGTGCAGTGGCACCAGCTCTTGG72661146TGTGTGCTGAGAATCCTGGGTCTGGTCATTTTATCGCTAAGAACTGCCTG
Mus musculus musculus genome assembly, chromosome: 7.
OW971769.1:62217060-62217079
GCTACCCTGTGCAGTGGCACCAGCTCTTGG62217060TGTGTGCTGAGAATCCTGGGTCTGGTCATTTTATCGCTAAGAACTGCCTG
Streptopelia turtur genome assembly, chromosome: 1.
LR594551.2:87866224-87866243
TGAAGCATTTGAAGGAGTCATGGAGTGTGG87866224TGTGTGCTGAGAATCCTGGGACTTCACATGATCAGCAGAATTGCAGTCTG
Caprimulgus europaeus genome assembly, chromosome: 1.
OU015523.1:4670180-4670199
TGAAGCATTTGAAGGAGTCATGGAGTGTGG4670180TGTGTGCTGAGAATCCTGGGACTTCACATGATCAGCAGAATTGCAGTCTG
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 16.
OU383789.1:6116406-6116425
CATGGGCCAGAGGGGTCACAGCCCTTCCAG6116406TGTGTGCTGAGAATCCTGGGAGGGTTGCAAAGTAAATGCTGCTCCCCCTC
Phalacrocorax aristotelis genome assembly, chromosome: 1.
OX451222.1:116833634-116833653
TGAAGCATTTGAAGGAGTCATGGAGTGTGG116833634TGTGTGCTGAGAATCCTGGGACTTCACATGATCGGCAGAATTGCAGTCTG
Tetrao urogallus genome assembly, chromosome: 1.
OX596294.1:102528535-102528554
TGAAGCATTTGAAGGTGTCATGGAGTGCGG102528535TGTGTGCTGAGAATCCTGGGACTTCACATGATCAGCAGAATTGCAGTCTG
Cucumis melo subsp. agrestis EST, clone AI_24-F12-M13R.
AM714734.2:749-768
ATTTTGAGCATGGCCTTCTCACCATTTTGC749TGTGTGCTGAGAATCCTGGGTTTTACTTTGCAAAGGTATTGCG
Cucumis melo subsp. melo EST, clone PSI_08-C12-M13R.
AM721914.2:757-776
ATTTTGAGCATGGCCTTCTCACCATTTTGC757TGTGTGCTGAGAATCCTGGGTTTTACTTTGCAAAGGTATTGCGCAGGGCA
Cucumis melo subsp. melo EST, clone HS_04-G03-M13R.
AM726050.2:757-776
ATTTTGAGCATGGCCTTCTCACCATTTTGC757TGTGTGCTGAGAATCCTGGGTTTTACTTTGCAAAGGTATTGCGCAGGGCA
Cucumis melo subsp. agrestis EST, clone A_02-B04-M13R.
AM728132.1:824-843
TTTTGAGCATGGCCTTCTCACCATTTTTGC824TGTGTGCTGAGAATCCTGGGTTTTAC
4147550 BARC_3GAL chicken mixed tissue Gallus gallus cDNA clone 3GAL_45M16 5', mRNA sequence.
DN851898.1:330-349
TGAAGCATTTGAAGGTGTCATGGAGTGCGG330TGTGTGCTGAGAATCCTGGGACTTCACATGATCAGCAGAATTGCAGTCTT
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_8967, mRNA sequence.
JW927132.1:166-185
ATTTTGAGCATGGCCTTCTCACAATTTTGC166TGTGTGCTGAGAATCCTGGGTTTTACTTTGCAAAGGTATTGCGCAAGGCA
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_23928, mRNA sequence.
JW941799.1:913-932
ATTTTGAGCATGGCCTTCTCACAATTTTGC913TGTGTGCTGAGAATCCTGGGTTTTACTTTGCAAAGGTATTGCGCAAGGCA
Cucumis melo isolate PI 511890 chromosome 10.
CP136109.1:18371882-18371901
ATTTTGAGCATGGCCTTCTCACCATTTTGC18371882TGTGTGCTGAGAATCCTGGGTTTTACTTTGCAAAGGTATTGTTCTTAAAC
Cucumis melo genomic chromosome, chr_10.
LN713264.1:19062424-19062443
ATTTTGAGCATGGCCTTCTCACCATTTTGC19062424TGTGTGCTGAGAATCCTGGGTTTTACTTTGCAAAGGTATTGTTCTTAAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCCAGGATTCTCAGCACACA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCAGGATTCTCAGCACACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.482 | 0.473 | search_plus_done; http://172.18.8.135:50400/match?q=CCCAGGATTCTCAGCACACA&k=0&no_gap=0&offset=0&limit=50
0.717 | 0.235 | search_minus_done; http://172.18.8.135:50400/match?q=TGTGTGCTGAGAATCCTGGG&k=0&no_gap=0&offset=0&limit=37
0.728 | 0.011 | cgi_end;

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