GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 11:01:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sciurus vulgaris genome assembly, chromosome: 3.
LR738613.1:18079012-18079031
CCCAGTGGGTCTAAGGAAATTTATTTTTAA18079012CCCAGTCATCATTGCCTCAGCTTTTGGAGGCAAAACATGAGATCTCTTTT
Lotus japonicus genomic DNA, chromosome 3, clone: LjT45P14, TM0196a.
AP006111.1:4106-4125
AGAAAATACCCAAAAAAACTAGGACAAAAA4106CCCAGTCATCATTGCCTCAGATGAGGTTTTAGAAGATCATTTCAAGTCAC
Lotus japonicus B-129 DNA, chromosome 3, complete sequence.
AP022631.1:25900907-25900926
GTGACTTGAAATGATCTTCTAAAACCTCAT25900907CTGAGGCAATGATGACTGGGTTTTTGTCCTAGTTTTTTTGGGTATTTTCT
Germaria angustata genome assembly, chromosome: 3.
OY813000.1:49649626-49649645
ACCCGTTCGTTTGAGTTGTTGCATGGAAGT49649626CTGAGGCAATGATGACTGGGAATTATTCCATTTATTGGCCACAAATTTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCCAGTCATCATTGCCTCAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCAGTCATCATTGCCTCAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.094 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=CCCAGTCATCATTGCCTCAG&k=0&no_gap=0&offset=0&limit=50
0.110 | 0.016 | search_minus_done; http://172.18.8.135:50400/match?q=CTGAGGCAATGATGACTGGG&k=0&no_gap=0&offset=0&limit=48
0.112 | 0.001 | cgi_end;

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