GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:09:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Solanum melongena mRNA, clone: AE002I17, 5'end, expressed in ovary at anthesis.
FS000885.1:150-169
TTGTGATGTGGTGTCTTGGTCGGCTTCTGC150GAATTACGCGACCTTATGGGTCGGAGCGAGAAGATTGCAGCCTCCTGTTA
Solanum melongena mRNA, clone: MLF04M18, 5'end, expressed in leaf at fully expanded leaf.
FS025114.1:229-248
TTGTGATGTGGTGTCTTGGTCGGCTTCTGC229GAATTACGCGACCTTATGGGTCGGAGCGAGAAGATTGCAGCCTCCTGTTA
Solanum melongena mRNA, clone: SHT04A05, 5'end, expressed in shoot at 7d after germination.
FS064903.1:144-163
TTGTGATGTGGTGTCTTGGTCGGCTTCTGC144GAATTACGCGACCTTATGGGTCGGAGCGAGAAGATTGCAGCCTCCTGTTA
Solanum melongena mRNA, clone: SHT07B19, 5'end, expressed in shoot at 7d after germination.
FS066592.1:145-164
TTGTGATGTGGTGTCTTGGTCGGCTTCTGC145GAATTACGCGACCTTATGGGTCGGAGCGAGAAGATTGCAGCCTCCTGTTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCCATAAGGTCGCGTAATTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCATAAGGTCGCGTAATTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.111 | 0.103 | search_plus_done; http://172.18.8.135:50400/match?q=CCCATAAGGTCGCGTAATTC&k=0&no_gap=0&offset=0&limit=50
0.419 | 0.307 | search_minus_done; http://172.18.8.135:50400/match?q=GAATTACGCGACCTTATGGG&k=0&no_gap=0&offset=0&limit=50
0.422 | 0.003 | cgi_end;

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