GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:01:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Mus spretus genome assembly, chromosome: 14.
OW971690.1:1150300-1150319
ACACACACACACACACGTACAGTACATATA1150300CCCATTAACTCACTCACACATACACATTTTCTGTCAAAACAATGAGAACA
Gobius niger genome assembly, chromosome: 1.
OX637595.1:50779184-50779203
TCAGTCGTCAACATCTATTCTGCACATACA50779184CCCATTAACTCACTCACACAGTCCTATACACCGACTCAAACCCGCACCCA
Fringilla coelebs genome assembly, chromosome: 5.
OY740729.1:16397628-16397647
AATTGTTAGGAAAAGTGAGCGTGAAGATTT16397628CCCATTAACTCACTCACACAACTGGAGAAGAAGGGCTGCTTTCCTTGCTT
Apocheima hispidaria genome assembly, chromosome: 3.
OX388146.1:14559225-14559244
CACATATACAAGGACGTACGTTCACACATA14559225CCCATTAACTCACTCACACACACACGTACACTCACACACACGTACACATA
Gymnoscopelus braueri genome assembly, chromosome: 9.
OY725516.1:28345964-28345983
ACGTGCACGTGCGCTACACAAACGAGAGCG28345964TGTGTGAGTGAGTTAATGGGTTCTCTCACACACTCAACACAAACAGAACG
Lipophrys pholis genome assembly, chromosome: 10.
OY726542.1:3092374-3092393
GGTACCTTGCATGGCAGCCATTTCCATTGG3092374TGTGTGAGTGAGTTAATGGGGCTTTTCACAAAGTGACTGGTCATGTAACG
Brassica rapa genome, scaffold: A03.
LR031572.1:9173142-9173161
TTTGAGTTAGTCTCGCATCCTCTCTCTCTC9173142TGTGTGAGTGAGTTAATGGGTTTTGTTTCCCTCAAATAAAAATCGAACCT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:9295614-9295633
TTTGAGTTAGTCTCGCATCCTCTCTCTCTC9295614TGTGTGAGTGAGTTAATGGGTTTTGTTTCCCTCAAATAAAAATCGAACCT
Biomphalaria glabrata genome assembly, chromosome: 12.
OX365784.1:8020915-8020934
ATCAGGTATGTGTAATCTTAGTTGTGTGTG8020915TGTGTGAGTGAGTTAATGGGGTTTGCATGACTTTCCATGTGTTTATGTTG
Coelopa pilipes genome assembly, chromosome: 1.
OX376696.1:57073181-57073200
CAAGTTGTAGATGTTAATGTGAGGATTCAT57073181TGTGTGAGTGAGTTAATGGGTGGAGAGGAAGGCGGGGTGGGTGGACTCAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CCCATTAACTCACTCACACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCATTAACTCACTCACACA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.117 | 0.109 | search_plus_done; http://172.18.8.135:50400/match?q=CCCATTAACTCACTCACACA&k=0&no_gap=0&offset=0&limit=50
0.174 | 0.057 | search_minus_done; http://172.18.8.135:50400/match?q=TGTGTGAGTGAGTTAATGGG&k=0&no_gap=0&offset=0&limit=46
0.178 | 0.004 | cgi_end;

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