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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:23:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Ovis canadensis canadensis isolate 43U chromosome 8 sequence.
CP011893.1:80065474-80065493
TGCAGTCATAGTTTAATTACAAGTTAGTGG80065474CCCATTTTCCCACTTAACACTGTTATCCTAAGTTGTCAGCGCTGCTCACA
Bos mutus isolate yakQH1 chromosome 9.
CP027077.1:93369050-93369069
TGCAGTCATAGTTTCATTACAAGTTAGTGG93369050CCCATTTTCCCACTTAACACTGTTATCCTAAGTCGTCAGCGCTGTTCAGT
Bos taurus genome assembly, chromosome: 9.
LR962767.1:93993974-93993993
TGCAGTCATAGTTTCATTACAAGTTAGTGG93993974CCCATTTTCCCACTTAACACTGTTATCCTAAGTCGTCAGTGCTGTTCAGT
Bos taurus genome assembly, chromosome: 9.
LR962892.1:93860357-93860376
TGCAGTCATAGTTTCATTACAAGTTAGTGG93860357CCCATTTTCCCACTTAACACTGTTATCCTAAGTCGTCAGTGCTGTTCAGT
Bos gaurus x Bos taurus genome assembly, chromosome: 9.
OX258963.1:98297015-98297034
TGCAGTCATAGTTTCATTACAAGTTAGTGG98297015CCCATTTTCCCACTTAACACTGTTATCCTAAGTCGTCAGTGCTGTTCAGT
Bos taurus strain mammals genome assembly, chromosome: 9.
OX344698.1:99646799-99646818
TGCAGTCATAGTTTCATTACAAGTTAGTGG99646799CCCATTTTCCCACTTAACACTGTTATCCTAAGTCGTCAGTGCTGTTCAGT
Rangifer tarandus platyrhyncus genome assembly, chromosome: 34.
OX460345.1:32534684-32534703
TGCAGTCATAGTTTAATTACAAGTTAGTGG32534684CCCATTTTCCCACTTAACACTATCATCCTAAGTCGTCAGTGCTGTTTACA
Rangifer tarandus platyrhyncus genome assembly, chromosome: 32.
OX596116.1:35399410-35399429
TGCAGTCATAGTTTAATTACAAGTTAGTGG35399410CCCATTTTCCCACTTAACACTATCATCCTAAGTCGTCAGTGCTGTTTACA
Bos taurus genome assembly, chromosome: Bta09.
OY997237.1:97516778-97516797
TGCAGTCATAGTTTCATTACAAGTTAGTGG97516778CCCATTTTCCCACTTAACACTGTTATCCTAAGTCGTCAGTGCTGTTCAGT
TSA: Cannabis sativa PK17530.1_1.CasaPuKu mRNA sequence.
JP449789.1:204-223
TTTTGAAGAATCTTCTAATAAAAACCCCAC204CCCATTTTCCCACTTAACACTTTTCTTCTTTCTTTCTTCTTCTTCTTCTT
GC_Bc023E10.F GC_Bc Glycine canescens genomic 5', genomic survey sequence.
JS016862.1:842-861
TGATCTGATTTCATTTAGTGGTTGTCGTCT842CCCATTTTCCCACTTAACACAGGGACAAAAATAATTTTCCATGCTCCGGA
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-32I8.
CU570845.2:136249-136268
TGTAATCATACTTTAATTATAGTTTAGTGG136249CCCATTTTCCCACTTAACACGTATCCTAAGTCGCCAGCACTGTTAACAGT
Dolomedes plantarius genome assembly, chromosome: 8.
OU015497.1:114076827-114076846
ACTAAATGAACCTCACCATAAATTATTTTG114076827CCCATTTTCCCACTTAACACATTTTCACATGTCTCAATTCATCTGAGTGG
Anania hortulata genome assembly, chromosome: 1.
OY756388.1:20296477-20296496
GAAAGCAATTACACTCACATAGTGATAATG20296477CCCATTTTCCCACTTAACACATGCTTACTGAACGTTAACAACACTATTGT
Sus scrofa scrofa breed NS chromosome 1.
CP071552.1:10363208-10363227
ACTGTTAACAGTGCTGGCGACTTAGGATAC10363208GTGTTAAGTGGGAAAATGGGCCACTAAACTATAATTAAAGTATGATTACA
Sus scrofa genome assembly, chromosome: 1.
OY997208.1:10321308-10321327
ACTGTTAACAGTGCTGGCGACTTAGGATAC10321308GTGTTAAGTGGGAAAATGGGCCACTAAACTATAATTAAAGTATGATTACA
Muntiacus reevesi genome assembly, chromosome: 3.
OZ005626.1:166322273-166322292
ACTGTAAACAGCACTGACGACTTAGGATAA166322273GTGTTAAGTGGGAAAATGGGCCACTAACTTGTAATTAAACTATGACTGCA
GD_TBa061C22.R GD_TBa Glycine dolichocarpa genomic 3', genomic survey sequence.
HN360629.1:567-586
TGTATTGGTGGATAAGTGTGGAAAGGGTTT567GTGTTAAGTGGGAAAATGGGATGGAATTTGATGAACACATTGTGAGTTGT
GD_TBa061G22.R GD_TBa Glycine dolichocarpa genomic 3', genomic survey sequence.
HN385357.1:568-587
TGTATTGGTGGAGAGGTGTGGAAAGGGCTT568GTGTTAAGTGGGAAAATGGGATGGAATTTGATGAAAACATTGTGATTTGT
Bos taurus clone CH240-216C22, WORKING DRAFT SEQUENCE, 6 unordered pieces.
AC170135.3:125673-125692
ACTGAACAGCACTGACGACTTAGGATAACA125673GTGTTAAGTGGGAAAATGGGCCACTAACTTGTAATGAAACTATGACTGCA
Bos taurus clone CH240-103E4, WORKING DRAFT SEQUENCE, 5 unordered pieces.
AC183136.2:54183-54202
ACTGAACAGCACTGACGACTTAGGATAACA54183GTGTTAAGTGGGAAAATGGGCCACTAACTTGTAATGAAACTATGACTGCA
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-125F5.
CU915538.2:75124-75143
NNNNNNNNNNGTGCTGGCGACTTAGGATAC75124GTGTTAAGTGGGAAAATGGGCCACTAAACTATAATTAAAGTATGATTACA
Leptopterna dolabrata genome assembly, chromosome: 13.
OX940987.1:18302260-18302279
CTCGGCAGCCCGATCGGATTGCACCCAGGG18302260GTGTTAAGTGGGAAAATGGGTGTAAAAATAGGGGTTTTCGAGGTTTTTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCCATTTTCCCACTTAACAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCATTTTCCCACTTAACAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.266 | 0.257 | search_plus_done; http://172.18.8.135:50400/match?q=CCCATTTTCCCACTTAACAC&k=0&no_gap=0&offset=0&limit=50
0.453 | 0.187 | search_minus_done; http://172.18.8.135:50400/match?q=GTGTTAAGTGGGAAAATGGG&k=0&no_gap=0&offset=0&limit=36
0.459 | 0.006 | cgi_end;

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