GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-10 15:59:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

CGN-40013 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w9g20 5', mRNA sequence.
DV695218.1:56-75
AATAACTATAGTCTAACAGCAATCCCCATT56CCCCCACCCACTTCTCTTTGCCATTTCTAAATTCTTCTATTAAGTACTAC
CA00-XX-EA1-056-F06-EC.F Coffea arabica EA1 Coffea arabica cDNA clone CA00-XX-EA1-056-F06-EC, mRNA sequence.
GW446042.1:73-92
AAAAACTATAGCTCAACAGCAATCCCCATT73CCCCCACCCACTTCTCTTTGCCATTTCTAAATTCTTCTATTAAGTACTAC
TSA: Coleochaete sp. CFD corb_UMD_Coleochaete_c5666_c_s mRNA sequence.
JO235758.1:1272-1291
TTTAAAGTAGGACACGTCTCCTTGCACCCT1272CCCCCACCCACTTCTCTTTGCATCGTGAAAATGGTATGATATGTTATTAT
Acholoe squamosa genome assembly, chromosome: 13.
OX439047.1:11682518-11682537
AATTCATGTTTCCCATTTTTTTTTATCTGT11682518CCCCCACCCACTTCTCTTTGGCACAAATCAATATCAACAACAGATGACTA
Agonopterix alstromeriana genome assembly, chromosome: 14.
OZ004675.1:17395081-17395100
AAGGTTACCTCACCACTCGGCTACTTGTAT17395081CCCCCACCCACTTCTCTTTGTTGGCTTTTTAGTGAAATTTGTTCAGTTTT
Plecotus auritus genome assembly, chromosome: 12.
OY734034.1:40687645-40687664
GGAGCTGCTCTTTCTGTTCTTTATTTTTGC40687645CAAAGAGAAGTGGGTGGGGGTACATTTAGGCATTCAGAGTGACCGTTCCA
Thalassophryne amazonica genome assembly, chromosome: 3.
LR722968.1:86378065-86378084
CAAAACAAATTTAATTTTCTTTGGATGAAC86378065CAAAGAGAAGTGGGTGGGGGGGGGGTGCATCTCTCATATCATTCCTCCCT
Scyliorhinus canicula genome assembly, chromosome: 7.
LR744036.1:12704527-12704546
TAACCGCTGTGCTACCGTACTGAATACGGG12704527CAAAGAGAAGTGGGTGGGGGTATGGGTTTGCATGAGTTGACATTAAGTTG
Sambucus nigra genome assembly, chromosome: 9.
OX422215.1:113659783-113659802
AATTCGGTGAGGGAAGGGGTTAGGGTTCTT113659783CAAAGAGAAGTGGGTGGGGGCAGGGAAGGGGAGAGAGAGGTTAATGGATT
Adalia decempunctata genome assembly, chromosome: 1.
OX637695.1:37821408-37821427
GAACGAAAAAAAGAACAAACATGACGAAAA37821408CAAAGAGAAGTGGGTGGGGGGATCTGAAACATCAAATATAATAAAATTCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCCCCACCCACTTCTCTTTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCCCACCCACTTCTCTTTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.473 | 0.464 | search_plus_done; http://172.18.8.135:50400/match?q=CCCCCACCCACTTCTCTTTG&k=0&no_gap=0&offset=0&limit=50
0.606 | 0.133 | search_minus_done; http://172.18.8.135:50400/match?q=CAAAGAGAAGTGGGTGGGGG&k=0&no_gap=0&offset=0&limit=45
0.609 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).