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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:24:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Platichthys flesus genome assembly, chromosome: 17.
OX438732.1:3293018-3293037
AAAGCGTTTTTTTTTTTAACACGGGACACG3293018CCCCCTCTTCTTTCACACAAACAGATTCATAAAAGTCTCTAATCGCCATC
USDA-FP_119000-718 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-15_G11 5', mRNA sequence.
CF504229.1:56-75
ACACAGCCTTTGGGCCATTGTTCAGTCAGT56CCCCCTCTTCTTTCACACAAGAGACTGGAGAGAGAGAGAGAGGAAGGTGA
CGF1004225_D04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_D04 5', mRNA sequence.
CK934906.1:63-82
NNNCAGCCTTTGGGCCATTGTTCAGTCAGT63CCCCCTCTTCTTTCACACAAGAGACTGGAGAGAGAGAGAGAGGAAGGTGA
Citrus tamurana mRNA, clone: SHA17D12_F1, 5'-end sequence, expressed in style.
DC897057.1:66-85
ACACAGCCTTTGGGCCATTGTTCAGTCAGT66CCCCCTCTTCTTTCACACAAGAGACTGGAGAGAGAGAGAGAGAGGAAGGT
CSAH-PNP1246H02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone CSAH-PNP1246H02 5', mRNA sequence.
DR403840.1:9-28
GGGGGAGT9CCCCCTCTTCTTTCACACAAGAGACTGGAGAGAGAGAGAGAGGAAGGTGA
IC0AAA38AD01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY274953.1:35-54
ATACAGCCTTTGGGCCATTGTTCAGTCAGT35CCCCCTCTTCTTTCACACAAGAGACTGGAGAGAGAGAGAGAGGAAGGTGA
CS00-C1-100-025-H08-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY651765.1:82-101
TTCCANCCTTTGGGCCATTGTTCAGTCAGT82CCCCCTCTTCTTTCACACAAGAGACTGGAGAGAGAGAGAGAGGAAGGTGA
CS00-C3-704-048-C06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY731818.1:85-104
ACACAGCCTTTGGGCCATTGTTCAGTCAGT85CCCCCTCTTCTTTCACACAAGAGACTGGAGAGAGAGAGAGAGAGAGGAAG
CS00-C3-704-058-B04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY733393.1:85-104
ACACAGCCTTTGGGCCATTGTTCAGTCAGT85CCCCCTCTTCTTTCACACAAGAGACTGGAGAGAGAGAGAGAGAGAGGAAG
IC0AAA38AD01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA38AD01, mRNA sequence.
FC905496.1:35-54
ATACAGCCTTTGGGCCATTGTTCAGTCAGT35CCCCCTCTTCTTTCACACAAGAGACTGGAGAGAGAGAGAGAGGAAGGTGA
3_Tms_b3v08.
OB793871.1:174653-174672
ATATTTAGGGTGATTTTTCATAAATCATTT174653CCCCCTCTTCTTTCACACAAATTTGTGTACATTTCATATAAATTATACGT
4_Tbi_b3v08.
OD568972.1:49609-49628
AATCTTGCCTGGATGTACTGCAGTTTATTT49609CCCCCTCTTCTTTCACACAAATGCTGGTTATGTTCTCTATCCCTGTTAGA
4_Tte_b3v08.
OE001600.1:48904-48923
AATCTTGCCTGGATGTACTGCAGTTTATTT48904CCCCCTCTTCTTTCACACAAATGCTGGTTATGTTCTCTATCCCTGTTAGA
5_Tge_b3v08.
OE839288.1:282781-282800
AATCCTGCCTGGGTGTACTGCGGTTTATTT282781CCCCCTCTTCTTTCACACAAATGCTGGTTACCTTCCTCTCAATTTTATCT
Lasioglossum morio genome assembly, chromosome: 2.
OU744324.1:727583-727602
TCCTCTTCTTCGCTCTTCTTCCCTCTTCTT727583CCCCCTCTTCTTTCACACAAACTCACTCGCGACCTACGAAACTCCCAAAA
Sylvilagus floridanus genome assembly, chromosome: 17.
OX463239.1:18891851-18891870
ACTGCCTACCCACCTGGGTTCCTGAAAACC18891851TTGTGTGAAAGAAGAGGGGGCGGAAGAGGAGGAAGGACAAGGCGAGAACA
Pleuronectes platessa genome assembly, chromosome: 18.
OX374665.1:19945417-19945436
TCTCCCTTCGTGACTCGTTTATGAATCTGT19945417TTGTGTGAAAGAAGAGGGGGCGTGTCACGTGTAAAAAAAGGGCTTTGGTG
Canna indica chromosome 6.
CP136895.1:18163396-18163415
TGACCTACGACCTTGCTCTGATACCAATTG18163396TTGTGTGAAAGAAGAGGGGGTGTTGAATAGTGTCTGTCCCCTTTCTATTG
Citrus sinensis genome assembly, chromosome: 3.
OY754320.1:3635139-3635158
TCACCTTCCTCTCTCTCTCTCTCCAGTCTC3635139TTGTGTGAAAGAAGAGGGGGACTGACTGAACAATGGCCCAAAGGCTGTGT
1_Tdi_b3v08.
OA568933.1:50183-50202
AGATAGAATTTATAGGACGGTAAACAGCAT50183TTGTGTGAAAGAAGAGGGGGAAATAAACCGCAGTACACCCAGGCAGGCTT
1_Tps_b3v08.
OD001467.1:106362-106381
AGATAGAATTTATAGGACGGTAAACAGCAT106362TTGTGTGAAAGAAGAGGGGGAAATAAACCGCAGTACACCCAGGCAGGCTT
Parasteatoda lunata genome assembly, chromosome: 3.
OX421972.1:79617289-79617308
AGATTTCTTACTTTGCTGCCAAGGTGAAGG79617289TTGTGTGAAAGAAGAGGGGGAAAAAATTCGAATAAAATTATTAAGATAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCCCCTCTTCTTTCACACAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCCCTCTTCTTTCACACAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.888 | 0.880 | search_plus_done; http://172.18.8.135:50400/match?q=CCCCCTCTTCTTTCACACAA&k=0&no_gap=0&offset=0&limit=50
1.027 | 0.139 | search_minus_done; http://172.18.8.135:50400/match?q=TTGTGTGAAAGAAGAGGGGG&k=0&no_gap=0&offset=0&limit=35
1.032 | 0.005 | cgi_end;

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