GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:24:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mus musculus genome assembly, chromosome: 6.
OW971564.1:15753754-15753773
TGAGTCCTCTTGTGTTTGGTGCCAAAAATT15753754CCCCTCCCAATTCTTCTCTCTCCTCTTGACACATATTTAAAACAGCCAAA
Mus musculus genome assembly, chromosome: 6.
OW971579.1:15671373-15671392
TGAGTCCTCTTGTGTTTGGTGCCAAAAATT15671373CCCCTCCCAATTCTTCTCTCTCCTCTTGACACATATTTAAAACAGCCAAA
Mus musculus genome assembly, chromosome: 6.
OW971599.1:15280607-15280626
TGAGTCCTCTTGTGTTTGGTGCCAAAAATT15280607CCCCTCCCAATTCTTCTCTCTCCTCTTGACACATATTTAAAACAGCCAAA
Mus musculus domesticus genome assembly, chromosome: 6.
OW971627.1:15763846-15763865
TGAGTCCTCTTGTGTTTGGTGCCAAAAATT15763846CCCCTCCCAATTCTTCTCTCTCTCCTCTTGACACATATTTAAAACAGCCA
Mus musculus genome assembly, chromosome: 6.
OW971641.1:15852237-15852256
TGAGTCCTCTTGTGTTTGGTGCCAAAAATT15852237CCCCTCCCAATTCTTCTCTCTCCTCTTGACACATATTTAAAACAGCCAAA
Mus musculus molossinus genome assembly, chromosome: 6.
OW971663.1:15573166-15573185
TGAGTCCTCTTGTATTTGGTTCCAAAAATT15573166CCCCTCCCAATTCTTCTCTCTCTCCTCTTGACACATATTTAAAACAGCCA
Mus spretus genome assembly, chromosome: 6.
OW971683.1:15606497-15606516
TGAGTCCTCTTGTGTTTGGTGCCAAAAATT15606497CCCCTCCCAATTCTTCTCTCTCTCCTCTTGACACATATTTAAAACAGCCA
Mus musculus genome assembly, chromosome: 6.
OW971714.1:15715834-15715853
TGAGTCCTCTTGTGTTTGGTGCCAAAAATT15715834CCCCTCCCAATTCTTCTCTCTCCTCTTGACACATATTTAAAACAGCCAAA
Mus musculus genome assembly, chromosome: 6.
OW971724.1:15758437-15758456
TGAGTCCTCTTGTATTTGGTTCCAAAAATT15758437CCCCTCCCAATTCTTCTCTCTCTCCTCTTGACACATATTTAAAACAGCCA
Mus musculus genome assembly, chromosome: 6.
OW971747.1:15706666-15706685
TGAGTCCTCTTGTGTTTGGTGCCAAAAATT15706666CCCCTCCCAATTCTTCTCTCTCCTCTTGACACATATTTAAAACAGCCAAA
Mus musculus musculus genome assembly, chromosome: 6.
OW971766.1:15280738-15280757
TGAGTCCTCTTGTATTTGGTGCCAAAAATT15280738CCCCTCCCAATTCTTCTCTCTCTCCTCTTGACACATATTTAAAACAGCCA
Mus musculus genome assembly, chromosome: 6.
OW971789.1:15525561-15525580
TGAGTCCTCTTGTGTTTGGTGCCAAAAATT15525561CCCCTCCCAATTCTTCTCTCTCCTCTTGACACATATTTAAAACAGCCAAA
Mus musculus genome assembly, chromosome: 6.
OW971810.1:15803293-15803312
TGAGTCCTCTTGTGTTTGGTGCCAAAAATT15803293CCCCTCCCAATTCTTCTCTCTCCTCTTGACACATATTTAAAACAGCCAAA
Mus musculus castaneus genome assembly, chromosome: 6.
OW971840.1:15480066-15480085
TGAGTCCTCTTGTGTTTGGTGCCAAAAATT15480066CCCCTCCCAATTCTTCTCTCTCCTCTTGACACATATTTAAAACAGCCAAA
Mus musculus genome assembly, chromosome: 6.
OW971858.1:15638346-15638365
TGAGTCCTCTTGTGTTTGGTGCCAAAAATT15638346CCCCTCCCAATTCTTCTCTCTCCTCTTGACACATATTTAAAACAGCCAAA
Mus musculus genome assembly, chromosome: 6.
OX389800.1:18676597-18676616
TGAGTCCTCTTGTGTTTGGTGCCAAAAATT18676597CCCCTCCCAATTCTTCTCTCTCCTCTTGACACATATTTAAAACAGCCAAA
Mus musculus genome assembly, chromosome: 6.
OX390150.1:16777489-16777508
TGAGTCCTCTTGTATTTGGTTCCAAAAATT16777489CCCCTCCCAATTCTTCTCTCTCTCCTCTTGACACATATTTAAAACAGCCA
Mus musculus genome assembly, chromosome: 6.
OX439020.1:20653766-20653785
TGAGTCCTCTTGTGTTTGGTGCCAAAAATT20653766CCCCTCCCAATTCTTCTCTCTCCTCTTGACACATATTTAAAACAGCCAAA
Lutra lutra genome assembly, chromosome: 1.
LR738403.1:80331977-80331996
GCTTCCCTGCCCCAGAAGCCTCTCTTGTGT80331977CCCCTCCCAATTCTTCTCTCTCCTACATCTCAAACACCATTGATTACCTC
Martes martes genome assembly, chromosome: 1.
OY734063.1:78179354-78179373
GCTTCCCTGCCCCAGAAGCCTCTCTTGTGT78179354CCCCTCCCAATTCTTCTCTCTCCTACATCTCAAACACCATTGATTACCTC
Zootoca vivipara genome assembly, chromosome: 9.
OY735910.1:56650065-56650084
GTCGAAAGATCAGCTCCTTTTGGCTCCTCC56650065CCCCTCCCAATTCTTCTCTCAATTCCATCTGGTCTTTATATGAACTTTGA
Mus musculus domesticus DNA, BAC clone: B6Ng01-098M21, 5' end.
DH908784.1:170-189
TGAGTCCTCTTGTGTTTGGTGCCAAAAATT170CCCCTCCCAATTCTTCTCTCTCCTCTTGACACATATTTAAAACAGCCAAA
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:984840-984859
AGTAACCGCTATCTCTTCCCCAACGTTCTC984840CCCCTCCCAATTCTTCTCTCAGTAAATCTATTCTTATGTCATAACTTCCG
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:692883-692902
AGTAACCCCTATCTCCTCCCCAACATTCTC692883CCCCTCCCAATTCTTCTCTCAATAGATCTATTATTATGTTATAACTTATA
Platycnemis pennipes genome assembly, chromosome: 10.
OW121856.1:84129701-84129720
ATGAACCGTAATGTGGCAACTCCCTCTCCC84129701CCCCTCCCAATTCTTCTCTCCTCCTCCACATCTTTTCTTTCTCATCATTC
Isoperla grammatica genome assembly, chromosome: 5.
OX246741.1:46859157-46859176
CCGCGTTCATTGCGCATGCGTTGACTATTT46859157CCCCTCCCAATTCTTCTCTCTCTCTCTCTCTCTCTCAGCTTAGTTTTTCC
Mus musculus BAC clone RP24-79O16 from 6, complete sequence.
AC124708.2:75463-75482
TTTGGCTGTTTTAAATATGTGTCAAGAGGA75463GAGAGAAGAATTGGGAGGGGAATTTTTGGCACCAAACACAAGAGGACTCA
Mus musculus BAC clone RP23-148L8 from 6, complete sequence.
AC136215.5:151723-151742
TTTGGCTGTTTTAAATATGTGTCAAGAGGA151723GAGAGAAGAATTGGGAGGGGAATTTTTGGCACCAAACACAAGAGGACTCA
Sciurus carolinensis genome assembly, chromosome: 8.
LR738597.1:65117167-65117186
CCAGTTCTAGAACTAGTATTAGTATATGGA65117167GAGAGAAGAATTGGGAGGGGGTCATTCCTTCCCCATGGAATTAATTGCAT
Takifugu rubripes genome assembly, chromosome: 17.
LR584239.2:14121417-14121436
GGTGGGGCTGCCAGTGCAGGTAGGTGTTTG14121417GAGAGAAGAATTGGGAGGGGGTGTCAACATAGAGCCGATGGGAATTGGGT
Rana temporaria genome assembly, chromosome: 12.
LR991691.1:8153913-8153932
AGAGGAGAGGAGGAGAAAGGGGAGAGGAAG8153913GAGAGAAGAATTGGGAGGGGGGCAAGGTAAGTAGGAGAGGGGAGATAGGG
Taurulus bubalis genome assembly, chromosome: 9.
OU342719.1:20643476-20643495
CAGACAGCTACACTATGCGAACAGTCAAAA20643476GAGAGAAGAATTGGGAGGGGGGGGGGGGGCTTAGCACACGGACAGTAAAG
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:32904450-32904469
CAGAAGTTATGATATAAGAATAGATCTACT32904450GAGAGAAGAATTGGGAGGGGGAGAACGTTGGGGAGGAGATAGGGGTTACT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:32499486-32499505
CAGAAGTTATGATATAAGAATAGATCTACT32499486GAGAGAAGAATTGGGAGGGGGAGAACGTTGGGGAGGAGATAGGGGTTACT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:30819596-30819615
CAGAAGTTATGACATAAGAATAGATCTACT30819596GAGAGAAGAATTGGGAGGGGGAGAACGTTGGGGAGGAGATAGGGGTTACT
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:29329092-29329111
CAGAAGTTATGATATAAGAATAGATCTACT29329092GAGAGAAGAATTGGGAGGGGGAGAACGTTGGGGAGGAGATAGGGGTTACT
Malus domestica genome assembly, chromosome: 1.
OU696677.1:29309645-29309664
CAGAAGTTATGATATAAGAATAGATCTACT29309645GAGAGAAGAATTGGGAGGGGGAGAACGTTGGGGAGGAGATAGGGGTTACT
Malus domestica genome assembly, chromosome: 1.
OU744542.1:32993554-32993573
CAGAAGTTATGATATAAGAATAGATCTACT32993554GAGAGAAGAATTGGGAGGGGGAGAACGTTGGGGAGGAGATAGGGGTTACT
Malus domestica genome assembly, chromosome: 1.
OU744953.1:32602083-32602102
CAGAAGTTATGATATAAGAATAGATCTACT32602083GAGAGAAGAATTGGGAGGGGGAGAACGTTGGGGAGGAGATAGGGGTTACT
Malus domestica genome assembly, chromosome: 1.
OU744991.1:29504275-29504294
CAGAAGTTATGATATAAGAATAGATCTACT29504275GAGAGAAGAATTGGGAGGGGGAGAACGTTGGGGAGGAGATAGGGGTTACT
Xylota segnis genome assembly, chromosome: 2.
OY757237.1:94840755-94840774
ACTTGCAGTTCAGAGTTGATAGATCCCAGT94840755GAGAGAAGAATTGGGAGGGGTAAGGTTCGAAGGGACATCGACTAACCACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCCCTCCCAATTCTTCTCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCCTCCCAATTCTTCTCTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.147 | 0.138 | search_plus_done; http://172.18.8.135:50400/match?q=CCCCTCCCAATTCTTCTCTC&k=0&no_gap=0&offset=0&limit=50
0.225 | 0.078 | search_minus_done; http://172.18.8.135:50400/match?q=GAGAGAAGAATTGGGAGGGG&k=0&no_gap=0&offset=0&limit=24
0.234 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).